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Lactobacillus salivarius UCC118 (lsal0)
Gene : clpB
DDBJ      :clpB         Chaperone
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  892/915 : Eukaryota  185/199 : Viruses  0/175   --->[See Alignment]
a.174.1c.37.1
:863 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   4->863 1qvrA PDBj 0.0 51.1 %
:RPS:PDB   94->267 2at0X PDBj 2e-29 16.4 %
:RPS:PDB   246->421 3c3jA PDBj 7e-39 12.0 %
:RPS:PDB   511->729 2ce4B PDBj 6e-47 9.9 %
:RPS:PDB   707->861 1b94A PDBj 3e-26 11.3 %
:RPS:SCOP  4->157 1qvrA1  a.174.1.1 * 2e-19 30.8 %
:RPS:SCOP  160->437,503->547 1qvrA2  c.37.1.20 * e-112 68.4 %
:RPS:SCOP  549->860 1ksfX3  c.37.1.20 * 5e-49 45.6 %
:HMM:SCOP  4->158 1qvrA1 a.174.1.1 * 4.4e-34 36.1 %
:HMM:SCOP  160->547 1qvrA2 c.37.1.20 * 4.9e-101 38.3 %
:HMM:SCOP  548->863 1qvrA3 c.37.1.20 * 4.3e-84 36.2 %
:RPS:PFM   205->340 PF00004 * AAA 6e-12 41.4 %
:RPS:PFM   402->545 PF05557 * MAD 9e-07 26.7 %
:RPS:PFM   561->625 PF06309 * Torsin 1e-05 41.3 %
:RPS:PFM   599->761 PF07724 * AAA_2 1e-41 58.9 %
:RPS:PFM   773->842 PF10431 * ClpB_D2-small 1e-06 35.7 %
:HMM:PFM   598->764 PF07724 * AAA_2 2.9e-58 50.3 155/171  
:HMM:PFM   205->321 PF00004 * AAA 2.5e-17 30.4 102/130  
:HMM:PFM   770->854 PF10431 * ClpB_D2-small 2.7e-27 35.3 85/89  
:HMM:PFM   17->64 PF02861 * Clp_N 4.9e-08 37.5 48/53  
:HMM:PFM   95->147 PF02861 * Clp_N 1.2e-09 35.8 53/53  
:HMM:PFM   561->629 PF06309 * Torsin 5.4e-06 34.3 67/127  
:HMM:PFM   401->523 PF05557 * MAD 4.5e-05 22.6 115/722  
:BLT:SWISS 1->859 CLPB_ENTFA 0.0 69.8 %
:PROS 296->308|PS00870|CLPAB_1
:PROS 633->651|PS00871|CLPAB_2
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99673.1 GT:GENE clpB GT:PRODUCT Chaperone GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 882294..884885 GB:FROM 882294 GB:TO 884885 GB:DIRECTION + GB:GENE clpB GB:PRODUCT Chaperone GB:NOTE COG0542 [O] ATPases with chaperone activity, ATP-binding subunit GB:PROTEIN_ID ABD99673.1 GB:DB_XREF GI:90821034 GB:GENE:GENE clpB LENGTH 863 SQ:AASEQ MDNENYTTEVQKSLAEAQKVAINRKHQEIGINELFKVLVQPGEIAAEIYKKAGLDIQAFENFIDGELDKVSVVEGGNVQYGQSISQQLFSLLQKAQEIAKNNQDTYVSVDTLMLALMELEYNPLTEYLKQTGLTKDQLGKIVADYRGGERVTSQDQEKGYKSLEKYGVNLNKEVRNGNQDPIIGRDEEIRDVIRILSRKAKNNPVLIGEPGVGKTAIVEGLAQRIVRNDVPDNLKDKTIISLDMGSLIAGAKYRGEFEERLKNVLKEVKKSEGKILLFIDEIHNIVGAGKTEGSMDAGNLLKPMLARGELHLIGATTLDEYREYIEKDKALEIRFQKVLVKEPTVEDTISILRRLKERYEIHHGVRIHDNALVAAATLSNRYITDRFLPDKALDLIDEACAEIRVEMNSVPNELDQVTRELMREEVEEAALKKETDAASKKRLEELQAELSNLREKANKLRQRWEDEKLDIQKVSDKKSELDKARHQLEEAENNYDLEKAAKLQHATIPQLEKELQQLENSERPKEWMVEESVTDKEIAEVISRMTGIPISKLVEGEREKLLHLADNLHKRVIGQDEAVDAVSDAVLRSRAGLQNPNKPLGSFLFLGPTGVGKTELAKALAENLFDSESHMVRIDMSEYMEKYSVSRLVGAAPGYVGYEEGGQLTEAVRRNPYTIILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVNFKNTILIMTSNLGSEFLLENDSTDGTISPEIKKKVMQLTQTHFKPEFLNRIDDILMFTPLTMDSVQKIVEKFIHQLSDRLESQEITLGIDEDAQKWIAKEGYNPAYGARPLQRFITNNVETPLAKEIIAGKILPHSKVTVTLVDNQLKFITQA GT:EXON 1|1-863:0| BL:SWS:NREP 1 BL:SWS:REP 1->859|CLPB_ENTFA|0.0|69.8|859/868| PROS 296->308|PS00870|CLPAB_1|PDOC00679| PROS 633->651|PS00871|CLPAB_2|PDOC00679| COIL:NAA 68 COIL:NSEG 1 COIL:REGION 433->500| SEG 82->93|qsisqqlfsllq| BL:PDB:NREP 1 BL:PDB:REP 4->863|1qvrA|0.0|51.1|801/803| RP:PDB:NREP 4 RP:PDB:REP 94->267|2at0X|2e-29|16.4|171/184| RP:PDB:REP 246->421|3c3jA|7e-39|12.0|166/361| RP:PDB:REP 511->729|2ce4B|6e-47|9.9|203/206| RP:PDB:REP 707->861|1b94A|3e-26|11.3|150/244| RP:PFM:NREP 5 RP:PFM:REP 205->340|PF00004|6e-12|41.4|116/123|AAA| RP:PFM:REP 402->545|PF05557|9e-07|26.7|135/668|MAD| RP:PFM:REP 561->625|PF06309|1e-05|41.3|63/126|Torsin| RP:PFM:REP 599->761|PF07724|1e-41|58.9|151/160|AAA_2| RP:PFM:REP 773->842|PF10431|1e-06|35.7|70/90|ClpB_D2-small| HM:PFM:NREP 7 HM:PFM:REP 598->764|PF07724|2.9e-58|50.3|155/171|AAA_2| HM:PFM:REP 205->321|PF00004|2.5e-17|30.4|102/130|AAA| HM:PFM:REP 770->854|PF10431|2.7e-27|35.3|85/89|ClpB_D2-small| HM:PFM:REP 17->64|PF02861|4.9e-08|37.5|48/53|Clp_N| HM:PFM:REP 95->147|PF02861|1.2e-09|35.8|53/53|Clp_N| HM:PFM:REP 561->629|PF06309|5.4e-06|34.3|67/127|Torsin| HM:PFM:REP 401->523|PF05557|4.5e-05|22.6|115/722|MAD| GO:PFM:NREP 5 GO:PFM GO:0005524|"GO:ATP binding"|PF00004|IPR003959| GO:PFM GO:0005524|"GO:ATP binding"|PF06309|IPR010448| GO:PFM GO:0005783|"GO:endoplasmic reticulum"|PF06309|IPR010448| GO:PFM GO:0051085|"GO:chaperone mediated protein folding requiring cofactor"|PF06309|IPR010448| GO:PFM GO:0005524|"GO:ATP binding"|PF07724|IPR013093| RP:SCP:NREP 3 RP:SCP:REP 4->157|1qvrA1|2e-19|30.8|143/145|a.174.1.1| RP:SCP:REP 160->437,503->547|1qvrA2|e-112|68.4|291/357|c.37.1.20| RP:SCP:REP 549->860|1ksfX3|5e-49|45.6|294/306|c.37.1.20| HM:SCP:REP 4->158|1qvrA1|4.4e-34|36.1|144/0|a.174.1.1|1/1|Double Clp-N motif| HM:SCP:REP 160->547|1qvrA2|4.9e-101|38.3|386/0|c.37.1.20|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 548->863|1qvrA3|4.3e-84|36.2|315/315|c.37.1.20|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 2957 OP:NHOMOORG 1083 OP:PATTERN ----------------------------------1-----1--11--2-1------------------ 2372422244222222222-22222222222222223444243232222222323232224322236443223223222224322222432312223--2232224232222222222222222433333333333444452226234334442233333333333454563333333333333332222123222222222222222222222222233322224444532153333333443334432222333334333334433444543533333363333344333333333333333333334333543333333332243222222223222334222233421222222212211111112313332222422222233232222222322222222223-24224432232233332342222232222234323322233333333333322222222222222--11111121111112122-2223233324755356557777566888837634555322323323223322422232322322222222222233222222232332222111122131335398222112222222222222222222142223334434222322222232222222222331-22222------24233232333244443-3123223325343222223433336532433432333333332422222232-3777777477761122222222222236331111211111111113333333222428888344454344343311111111124343333333444322324224452222222233333322222212331----1-11111111111111--1112223332233242 3311223-94312222422222222222233222222222322222222322222222223223222222222232213222122222-2924234222223134412B322122-11111111311313B1-2121121211111111111121-2121--1212-------3145B5t44454C9BK3AA4653423 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-1,69-84,143-164,487-488,490-490,517-533,593-593,730-743,863-864| PSIPRED ccHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEcHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccHHHHcccHHHHHHccccccccccHHHHHHHHHHHHcccccccEEEccccccHHHHHHHHHHHHHcccccHHHcccEEEEEEHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHcccccccccccHHHHHHHHHHcccEEEEEccccHHHHHHHcccHHHHHccEEEEcccccHHHHHHHHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHccccccccccccccHHHHHHHHcccccEEEEEcHHHccHHHHHHHHHHHccccccccccEEEccccEEEEEcccccHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccEEEEEEcc //