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Lactobacillus salivarius UCC118 (lsal0)
Gene : clpC
DDBJ      :clpC         Negative regulator of genetic competence
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  893/915 : Eukaryota  183/199 : Viruses  0/175   --->[See Alignment]
a.174.1c.37.1
:830 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   5->808 1qvrA PDBj e-152 46.8 %
:RPS:PDB   180->296 3bbnG PDBj 1e-29 15.4 %
:RPS:PDB   324->415 2eefA PDBj 1e-26 11.6 %
:RPS:PDB   485->682 2ce4B PDBj 2e-47 10.8 %
:RPS:PDB   659->818 1b94A PDBj 3e-28 11.4 %
:RPS:SCOP  5->141 1khyA  a.174.1.1 * 2e-22 19.5 %
:RPS:SCOP  175->446,473->499 1qvrA2  c.37.1.20 * 1e-96 57.5 %
:RPS:SCOP  501->820 1ksfX3  c.37.1.20 * 6e-47 45.9 %
:HMM:SCOP  5->159 1qvrA1 a.174.1.1 * 4.4e-27 33.1 %
:HMM:SCOP  172->499 1qvrA2 c.37.1.20 * 2.3e-77 38.2 %
:HMM:SCOP  501->830 1ksfX3 c.37.1.20 * 3.4e-85 32.6 %
:RPS:PFM   27->68 PF02861 * Clp_N 2e-04 42.9 %
:RPS:PFM   96->140 PF02861 * Clp_N 6e-06 44.4 %
:RPS:PFM   217->351 PF00004 * AAA 7e-09 34.7 %
:RPS:PFM   515->576 PF08298 * AAA_PrkA 2e-04 37.3 %
:RPS:PFM   551->719 PF07724 * AAA_2 9e-44 59.6 %
:RPS:PFM   736->808 PF10431 * ClpB_D2-small 6e-08 37.0 %
:HMM:PFM   550->722 PF07724 * AAA_2 1e-59 54.2 155/171  
:HMM:PFM   217->347 PF00004 * AAA 5e-17 30.4 115/130  
:HMM:PFM   18->70 PF02861 * Clp_N 4.7e-15 45.3 53/53  
:HMM:PFM   96->142 PF02861 * Clp_N 5.3e-12 42.6 47/53  
:HMM:PFM   728->812 PF10431 * ClpB_D2-small 8.8e-27 43.5 85/89  
:HMM:PFM   429->463 PF02151 * UVR 2e-08 45.7 35/36  
:HMM:PFM   195->234 PF01637 * Arch_ATPase 8e-05 30.0 40/234  
:HMM:PFM   513->578 PF06309 * Torsin 0.00026 32.8 64/127  
:BLT:SWISS 27->817 CLPB_OCEIH 0.0 58.8 %
:PROS 307->319|PS00870|CLPAB_1
:PROS 585->603|PS00871|CLPAB_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99011.1 GT:GENE clpC GT:PRODUCT Negative regulator of genetic competence GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 232289..234781 GB:FROM 232289 GB:TO 234781 GB:DIRECTION + GB:GENE clpC GB:PRODUCT Negative regulator of genetic competence GB:NOTE COG0542 [O] ATPases with chaperone activity, ATP-binding subunit GB:PROTEIN_ID ABD99011.1 GB:DB_XREF GI:90820372 GB:GENE:GENE clpC LENGTH 830 SQ:AASEQ MAMEERYTPSAKQVLVLAQQQANYFKHQAIGTEHLLLALTMEKNGVAAKVLQSFVVTEVDVREEIEHIVGYGNLQRRGADTYLPYSPRTRYVLERAREHAKLFNVEKVGTEHILLALLEDDKTISSRILAALNIDLRKVKNITYRTMGVDATTANRTRKKLALSEKKQDNGTPTLDELARDLTEMVRKDQIDPVVGRDNEIKRVVQILSRRTKNNPVLLGEPGVGKTAVAEGFSQKIVNGEVPDNLKNKRVMMLDMGSLVAGTKYRGEFEDRLKKIIEEIREDGNVILFIDEMHTLIGAGGAEGAIDASNILKPALARGEVQVIGATTLNEYQKYVEADAALERRFASVTINEPTPEVALTILKGLRPKYEKHHQLQITDEALESAVKLSKRYIASRFLPDKAIDLMDEAAARVRINNAQKVDKVSAIKKKLSELSQEKTEALLKEDFEKAAEIRNEELKIQEKLEKQIQRDKDEEDSNNYRVKVTAEDIAEVVSEWTGVPVTQINRSEGDRLIRLEKILHNRVIGQDEAVKAVSKAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAEAMFGSEDSMIRIDMSEYMEKYTTSRLIGSPPGYVGYDEGGQLTEKVRNNPYSVVLLDEVEKAHNDVFNILLQVLDDGFLTDSKGRKVDFRNTIIIMTSNLGATALRDEKSVGFGAKDVSDDYEAMAAKVRETLKKTFRPEFLNRLDEIVVFHSLNKEEIHQIVKLMAKNIIDRIKEQNINLKITPAAIDIVAEAGFDAEYGARPIRRILQDKIEDLLSEELLAGNIETGATVTIGAKKGEITIKVKNPVAAEKINS GT:EXON 1|1-830:0| BL:SWS:NREP 1 BL:SWS:REP 27->817|CLPB_OCEIH|0.0|58.8|781/809| PROS 307->319|PS00870|CLPAB_1|PDOC00679| PROS 585->603|PS00871|CLPAB_2|PDOC00679| SEG 13->22|qvlvlaqqqa| SEG 297->308|igaggaegaida| SEG 457->470|eelkiqeklekqiq| BL:PDB:NREP 1 BL:PDB:REP 5->808|1qvrA|e-152|46.8|728/803| RP:PDB:NREP 4 RP:PDB:REP 180->296|3bbnG|1e-29|15.4|117/154| RP:PDB:REP 324->415|2eefA|1e-26|11.6|86/156| RP:PDB:REP 485->682|2ce4B|2e-47|10.8|186/206| RP:PDB:REP 659->818|1b94A|3e-28|11.4|149/244| RP:PFM:NREP 6 RP:PFM:REP 27->68|PF02861|2e-04|42.9|42/52|Clp_N| RP:PFM:REP 96->140|PF02861|6e-06|44.4|45/52|Clp_N| RP:PFM:REP 217->351|PF00004|7e-09|34.7|118/123|AAA| RP:PFM:REP 515->576|PF08298|2e-04|37.3|59/356|AAA_PrkA| RP:PFM:REP 551->719|PF07724|9e-44|59.6|151/160|AAA_2| RP:PFM:REP 736->808|PF10431|6e-08|37.0|73/90|ClpB_D2-small| HM:PFM:NREP 8 HM:PFM:REP 550->722|PF07724|1e-59|54.2|155/171|AAA_2| HM:PFM:REP 217->347|PF00004|5e-17|30.4|115/130|AAA| HM:PFM:REP 18->70|PF02861|4.7e-15|45.3|53/53|Clp_N| HM:PFM:REP 96->142|PF02861|5.3e-12|42.6|47/53|Clp_N| HM:PFM:REP 728->812|PF10431|8.8e-27|43.5|85/89|ClpB_D2-small| HM:PFM:REP 429->463|PF02151|2e-08|45.7|35/36|UVR| HM:PFM:REP 195->234|PF01637|8e-05|30.0|40/234|Arch_ATPase| HM:PFM:REP 513->578|PF06309|0.00026|32.8|64/127|Torsin| GO:PFM:NREP 6 GO:PFM GO:0005515|"GO:protein binding"|PF02861|IPR004176| GO:PFM GO:0019538|"GO:protein metabolic process"|PF02861|IPR004176| GO:PFM GO:0005515|"GO:protein binding"|PF02861|IPR004176| GO:PFM GO:0019538|"GO:protein metabolic process"|PF02861|IPR004176| GO:PFM GO:0005524|"GO:ATP binding"|PF00004|IPR003959| GO:PFM GO:0005524|"GO:ATP binding"|PF07724|IPR013093| RP:SCP:NREP 3 RP:SCP:REP 5->141|1khyA|2e-22|19.5|128/132|a.174.1.1| RP:SCP:REP 175->446,473->499|1qvrA2|1e-96|57.5|267/357|c.37.1.20| RP:SCP:REP 501->820|1ksfX3|6e-47|45.9|296/306|c.37.1.20| HM:SCP:REP 5->159|1qvrA1|4.4e-27|33.1|145/0|a.174.1.1|1/1|Double Clp-N motif| HM:SCP:REP 172->499|1qvrA2|2.3e-77|38.2|325/0|c.37.1.20|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 501->830|1ksfX3|3.4e-85|32.6|319/319|c.37.1.20|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 3002 OP:NHOMOORG 1082 OP:PATTERN ----------------------------------1-----1--11--2-1------------------ 2382422244222222222-222222222222222234642432322222223432322243222374432232232222243222224323122231-3232224232222222222222222333333333333545452226234334442233333333333554574333333343344442222123222222222222222222222222233322223444533153333333443334432222333434434344433445553533333363333344333333333333333333334333543333333332244222222223232335222333521232222212221111112313332222422222233232222222322222222223-24224432232233332342222232222234323322233333333333322222222222222--11111121111112222-2223233324755356557777566888837634555322323323223322422232322322222222222343223322232332222111132132335399222112233333222222222222132223334434222322222232222222222331-22222------24233232333244443-3123223325343222223433336532433432333333332422222232-3777777477761122222222222236331111211111111113333333222428888344454344343311111111124343333333444333324224452222223233444422232323331----1-11111111111111--1112223332233242 3311223-94312222422222222222232222222222322222222222222222223223222222222232213222122222-2824223222223134412B321111-11111111311313B1-21211112111-111-111121-2121--1212-------3145B5t44454BACK3CA4653423 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 71-85,151-174,425-426,466-480,501-511,692-696,818-831| PSIPRED cccHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccEEEccccccHHHHHHHHHHHHHcccccHHHcccEEEEEEcHHHHccccHHHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHccccccccccHHHHHHHHHHcccEEEEEcccHHHHHHHccccHHHHHcccEEEcccccHHHHHHHHHHHHHHHHHHcccEEcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHHHHHHccccccEEEEEccHHHcHHHHHHHccccccccccHHHHHHHHHHHcccccEEEEEcHHHccHHHHHHHHHHHcccccccccccEEccccEEEEEccHHcHHHHHcccccccccccccccHHHHHHHHHHHHHHcccHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccEEEEEEccccccccccc //