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Lactobacillus salivarius UCC118 (lsal0)
Gene : fabB
DDBJ      :fabB         3-oxoacyl-[acyl-carrier-protein] synthase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  867/915 : Eukaryota  186/199 : Viruses  0/175   --->[See Alignment]
c.95.1
:412 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->410 1oxhA PDBj e-106 47.2 %
:RPS:PDB   4->410 1e5mA PDBj 3e-77 41.9 %
:RPS:SCOP  4->252 1dd8A1  c.95.1.1 * 3e-68 32.8 %
:RPS:SCOP  252->409 1b3nA2  c.95.1.1 * 6e-28 37.3 %
:HMM:SCOP  2->250 1e5mA1 c.95.1.1 * 1.6e-69 38.6 %
:HMM:SCOP  213->410 1tqyB2 c.95.1.1 * 7.3e-61 42.5 %
:RPS:PFM   4->245 PF00109 * ketoacyl-synt 2e-29 39.5 %
:RPS:PFM   273->323 PF02801 * Ketoacyl-synt_C 2e-08 47.1 %
:HMM:PFM   3->244 PF00109 * ketoacyl-synt 1.5e-55 32.5 234/253  
:HMM:PFM   253->366 PF02801 * Ketoacyl-synt_C 9.8e-37 37.7 114/119  
:BLT:SWISS 4->410 FABF_BACSU e-101 46.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99265.1 GT:GENE fabB GT:PRODUCT 3-oxoacyl-[acyl-carrier-protein] synthase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 502595..503833 GB:FROM 502595 GB:TO 503833 GB:DIRECTION + GB:GENE fabB GB:PRODUCT 3-oxoacyl-[acyl-carrier-protein] synthase GB:NOTE COG0304 [IQ] 3-oxoacyl-(acyl-carrier-protein) synthase GB:PROTEIN_ID ABD99265.1 GB:DB_XREF GI:90820626 GB:GENE:GENE fabB LENGTH 412 SQ:AASEQ MTNRVVITGMGIVGPVGNDRETFLKNIFDSKVGIEKITKFDATQTGISVAGEVKDFDPKNSIGKKAAKRMDLFSQYAVHSAIEAVEQAGINEENTDSYDMGVIYGSGIGGLTTIQEQVIKMHEKGPKRVSPMFVPTSIVNMAAGNIAMHFGAKNICTAVVTACSSATNAIGEAYRQIKEGRAQVMLTGGSEASVNEIGIAGFAALTALSPEKDPLKASLPFDRNRSGFVMGEGGATLVLENLEHAQKRNATILGEVVGYGSTCDAFHITSPDPTGEGAARAMKQAIDEAGITPDKVGYINAHGTATHANDSGESLAINKVFGENSSVMVSSTKSMTGHLLGAAGAIEAAITVRALQMQQLPENVGLNELDEECNINIVTKDKTTTSNLEYAISNSLGFGGHNAVLALRKWSE GT:EXON 1|1-412:0| BL:SWS:NREP 1 BL:SWS:REP 4->410|FABF_BACSU|e-101|46.8|406/413| SEG 325->336|ssvmvsstksmt| SEG 339->350|llgaagaieaai| BL:PDB:NREP 1 BL:PDB:REP 3->410|1oxhA|e-106|47.2|405/408| RP:PDB:NREP 1 RP:PDB:REP 4->410|1e5mA|3e-77|41.9|406/411| RP:PFM:NREP 2 RP:PFM:REP 4->245|PF00109|2e-29|39.5|233/245|ketoacyl-synt| RP:PFM:REP 273->323|PF02801|2e-08|47.1|51/118|Ketoacyl-synt_C| HM:PFM:NREP 2 HM:PFM:REP 3->244|PF00109|1.5e-55|32.5|234/253|ketoacyl-synt| HM:PFM:REP 253->366|PF02801|9.8e-37|37.7|114/119|Ketoacyl-synt_C| RP:SCP:NREP 2 RP:SCP:REP 4->252|1dd8A1|3e-68|32.8|247/253|c.95.1.1| RP:SCP:REP 252->409|1b3nA2|6e-28|37.3|158/161|c.95.1.1| HM:SCP:REP 2->250|1e5mA1|1.6e-69|38.6|249/250|c.95.1.1|1/1|Thiolase-like| HM:SCP:REP 213->410|1tqyB2|7.3e-61|42.5|193/0|c.95.1.1|1/1|Thiolase-like| OP:NHOMO 3782 OP:NHOMOORG 1053 OP:PATTERN -------------------------------------------------------------------- 2371I2233331-1ACCII-IDAAM8IHIIIBDCBC64462NEJ1111121123211411IH21N5RXHV31111111-1112111111114111111-257552H66241111111111111111111211111122255111C346455481111222211322BC9Q51111111111111111111121L111111112111111121137112111311111111193111111111111111111112-111111-1-11111111111111122211111241111111111111111111111111111111111111431111111111I1551111112--1211211311111111111111316222233333744333343633333333333333-4454644456425667446555554852253333333441111111113322113111111111111111111111111111111211112221553342EB6565224487882C564222312567123324336642332223411122221222225143251242142221353633B552212XI331321111111111111111111111334432265334366666566666666666661-2222111111182832432557255322-522222323353522222433483A842222222222222222522322222174656654556511243433365564284511113111111133111441132214844356D66352622879411111111234471222224644443333333322222212--1111--------1-1-------------------------1111111111191 1152Tl3-311-1127B96NEDILaMN111433HG45889469222HFCKEAE967NJC656111112-1111212111111111121-122B111----1-3111-152K23233-2121122412215A2-1211111221411211-31142422121228516547854872334q43347845AE473353223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 412 STR:RPRED 100.0 SQ:SECSTR ccccEEEEEEEEEcTTcccHHHHHHHHHTTcccEEEccccccTTccccEEEccccccGGGTccHHHHHTccHHHHHHHHHHHHHHHHHTccccTTTGGGEEEEEEcccccHHHHHHHHHHHHHHcGGGccTTHHHHHcTTHHHHHHHHHHTccccEEccccGGGHHHHHHHHHHHHHHTTcccEEEEEEEEccccHHHHHHHHHTTcccccTcGGGTccTTcTTccccccccEEEEEEEEEHHHHHHTTccccEEEEEEEEEEcccccccccTTcHHHHHHHHHHHHHHTccGGGccEEEccccccHHHHHHHHHHHHHHHGGGGGcEEEcTHHHHcccGGGHHHHHHHHHHHHHHHTEEcccTTcccccTTcccccccccccEEccccEEEEEEEETTTEEEEEEEEcccc DISOP:02AL 1-1,412-413| PSIPRED ccccEEEEEEEEEEcccccHHHHHHHHHccccccccccccccccccccEEEEcccccHHHcccHHHHHHccHHHHHHHHHHHHHHHHccccHHHcccccEEEEEEcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEEEEEHHHHHHcccEEEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHccccHHHccEEEccccccccccHHHHHHHHHHHcccccEEEEccccccccEEcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEEcccc //