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Lactobacillus salivarius UCC118 (lsal0)
Gene : ffh
DDBJ      :ffh          Signal recognition particle protein
Swiss-Prot:             

Homologs  Archaea  67/68 : Bacteria  898/915 : Eukaryota  195/199 : Viruses  0/175   --->[See Alignment]
a.24.13a.36.1b.65.1c.37.1
:482 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->420 2j289 PDBj e-100 45.1 %
:RPS:PDB   29->299 2cnwD PDBj 2e-36 29.9 %
:RPS:PDB   322->398 3bsdA PDBj 5e-08 10.4 %
:RPS:SCOP  9->96 1wgwA  a.24.13.1 * 5e-20 23.9 %
:RPS:SCOP  147->257 1f3uA  b.65.1.1 * 4e-30 19.4 %
:RPS:SCOP  302->398 1qzwA2  a.36.1.1 * 2e-29 26.8 %
:RPS:SCOP  370->420 1dulA  a.36.1.1 * 5e-08 25.5 %
:HMM:SCOP  5->98 1wgwA_ a.24.13.1 * 2.9e-28 53.2 %
:HMM:SCOP  96->302 1ls1A2 c.37.1.10 * 4.1e-57 41.3 %
:HMM:SCOP  302->434 1qzxA2 a.36.1.1 * 1.4e-50 49.6 %
:RPS:PFM   104->299 PF00448 * SRP54 3e-52 53.8 %
:RPS:PFM   332->420 PF02978 * SRP_SPB 9e-13 42.7 %
:HMM:PFM   104->300 PF00448 * SRP54 1.4e-78 53.1 196/196  
:HMM:PFM   331->430 PF02978 * SRP_SPB 4.1e-38 46.0 100/104  
:HMM:PFM   9->86 PF02881 * SRP54_N 2.6e-20 36.0 75/75  
:BLT:SWISS 4->397 SRP54_STRMU e-146 65.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99439.1 GT:GENE ffh GT:PRODUCT Signal recognition particle protein GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 674693..676141 GB:FROM 674693 GB:TO 676141 GB:DIRECTION + GB:GENE ffh GB:PRODUCT Signal recognition particle protein GB:NOTE COG0541 [U] Signal recognition particle GTPase GB:PROTEIN_ID ABD99439.1 GB:DB_XREF GI:90820800 GB:GENE:GENE ffh LENGTH 482 SQ:AASEQ MAIVAFEGLTERLQNAIGKLRRKGKISESDVKEVMREIRLALLEADVNFKVVKDFVKTVRSRAIGAEVLESLTPAQQIVKIVNEELVKVMGEEAAPLNKSAKIPTIIMMVGLQGAGKTTTASKLANKLKKEKNARPFMIAADVYRPAAIDQLKILGKDIDVPVFSLGVDVDPVEIVRQGLEEAKDKKNDYVIIDTAGRLQIDEKLMQELSSIKELAQPDEILLTVDAMTGQNAVEVAKGFNDQLDVTGVVLTKLDGDTRGGAALSIRAVTGKPIKFIGQGEKMTDLDVFYPDRMASRILGMGDMLTLIEKAQQEYDQKQAEELAEKMRENNFDFNDFLIQMEQVQNMGPMEDIIKMIPGMANNPALKNLKVDPKDIEHTKAIVYSMTPQERENPDLLNPSRRRRIAAGSGRPIQEVNRMIKQFKQMQDMMKKMSNGNFSGMEGLLGGGMQGKLAKMSMNRMIRKNKKLKQKKLKKLLKRKGK GT:EXON 1|1-482:0| BL:SWS:NREP 1 BL:SWS:REP 4->397|SRP54_STRMU|e-146|65.7|394/516| SEG 46->59|dvnfkvvkdfvktv| SEG 123->134|klanklkkekna| SEG 399->413|psrrrriaagsgrpi| SEG 421->433|kqfkqmqdmmkkm| SEG 440->456|gmegllgggmqgklakm| SEG 464->481|knkklkqkklkkllkrkg| BL:PDB:NREP 1 BL:PDB:REP 6->420|2j289|e-100|45.1|415/430| RP:PDB:NREP 2 RP:PDB:REP 29->299|2cnwD|2e-36|29.9|268/281| RP:PDB:REP 322->398|3bsdA|5e-08|10.4|77/359| RP:PFM:NREP 2 RP:PFM:REP 104->299|PF00448|3e-52|53.8|195/196|SRP54| RP:PFM:REP 332->420|PF02978|9e-13|42.7|89/101|SRP_SPB| HM:PFM:NREP 3 HM:PFM:REP 104->300|PF00448|1.4e-78|53.1|196/196|SRP54| HM:PFM:REP 331->430|PF02978|4.1e-38|46.0|100/104|SRP_SPB| HM:PFM:REP 9->86|PF02881|2.6e-20|36.0|75/75|SRP54_N| GO:PFM:NREP 5 GO:PFM GO:0005525|"GO:GTP binding"|PF00448|IPR000897| GO:PFM GO:0006614|"GO:SRP-dependent cotranslational protein targeting to membrane"|PF00448|IPR000897| GO:PFM GO:0006614|"GO:SRP-dependent cotranslational protein targeting to membrane"|PF02978|IPR004125| GO:PFM GO:0008312|"GO:7S RNA binding"|PF02978|IPR004125| GO:PFM GO:0048500|"GO:signal recognition particle"|PF02978|IPR004125| RP:SCP:NREP 4 RP:SCP:REP 9->96|1wgwA|5e-20|23.9|88/99|a.24.13.1| RP:SCP:REP 147->257|1f3uA|4e-30|19.4|108/118|b.65.1.1| RP:SCP:REP 302->398|1qzwA2|2e-29|26.8|97/138|a.36.1.1| RP:SCP:REP 370->420|1dulA|5e-08|25.5|51/69|a.36.1.1| HM:SCP:REP 5->98|1wgwA_|2.9e-28|53.2|94/0|a.24.13.1|1/1|Domain of the SRP/SRP receptor G-proteins| HM:SCP:REP 96->302|1ls1A2|4.1e-57|41.3|206/0|c.37.1.10|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 302->434|1qzxA2|1.4e-50|49.6|133/138|a.36.1.1|1/1|Signal peptide-binding domain|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s44444569B2674432224 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 420 STR:RPRED 87.1 SQ:SECSTR HHHHHcTHHHHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHTTHHcccHHHHHHHHHHHHTcccHHHHHHHHTTcccccccccccEEEEEccTTccHHHHHHHHHHHHHTTTcccEEEEccccccTTHHHHHHHHHHHHTccEEcccTTccHHHHHHHHHHHHHHTTccEEEEccccccTTcHHHHHHHHHHHHHHHccEEEEEEETTccTHHHHHHHHHHHHHcccEEEEEcTTcccccTTHHHHHHHHcccEEEEEccccTTcEEEccHHHHHHHHHTTTcHHHHHHHHHHHTTHHHHHHHHHHHHTTcccHHHHHHHHHHHHTTccHHHHHHHHHHHccGGGcccccccHHHHHHHHHHHTTccHHHHHcGGGccHHHHHHHHHHHTccHHHHHHHH############################################################## DISOP:02AL 13-20,318-318,321-321,350-375,427-438,463-472,474-475,480-483| PSIPRED cHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHcccccccccHHHccccHHHHHHHHHHHHHccHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //