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Lactobacillus salivarius UCC118 (lsal0)
Gene : hsdM
DDBJ      :hsdM         Type I restriction-modification system methylation subunit
Swiss-Prot:             

Homologs  Archaea  25/68 : Bacteria  484/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.66.1
:529 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->75 1pk0B PDBj 5e-04 39.6 %
:BLT:PDB   168->442 2okcB PDBj 4e-19 27.7 %
:RPS:PDB   124->529 2ar0B PDBj 4e-33 16.2 %
:RPS:SCOP  152->526 2ar0A1  c.66.1.45 * 4e-31 18.3 %
:HMM:SCOP  6->526 2ar0A1 c.66.1.45 * 1.2e-122 40.1 %
:RPS:PFM   8->140 PF12161 * HsdM_N 1e-11 39.8 %
:RPS:PFM   167->431 PF02384 * N6_Mtase 2e-64 53.5 %
:HMM:PFM   167->472 PF02384 * N6_Mtase 1.5e-118 50.7 298/311  
:HMM:PFM   8->157 PF12161 * HsdM_N 1.1e-23 29.0 131/132  
:BLT:SWISS 8->487 T1MD_MYCPN 7e-83 39.2 %
:PROS 294->300|PS00092|N6_MTASE
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99729.1 GT:GENE hsdM GT:PRODUCT Type I restriction-modification system methylation subunit GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(946586..948175) GB:FROM 946586 GB:TO 948175 GB:DIRECTION - GB:GENE hsdM GB:PRODUCT Type I restriction-modification system methylation subunit GB:NOTE COG0286 [V] Type I restriction-modification system methyltransferase subunit GB:PROTEIN_ID ABD99729.1 GB:DB_XREF GI:90821090 GB:GENE:GENE hsdM LENGTH 529 SQ:AASEQ MAQEEVTLERSLDNAANVLRSKMDANEYKNYTLGTIFYKYLSDSMLYYVAELLEEKNISLEEAQKLYEENQDDQYLIEELDIKFNYVIEAKNTYTNILKSINNHTFQVSQLGDAFNSIESQGKEFEGLFDDYDLYSKRLGNTAQKQSDTISEVLSAIGKLEIVKTPEDTLGNAYEYLIKQFASESGKKAGEFYTPQKVSRLLARLTLVDKDYTDGMTVYDPTMGSGSLLLNFRKYVEHPKRITYFGQEINTSTYNLARMNMILHHVDVVNQKLRNNDTLDEDWPVEEITNFDAVVMNPPYSHKWSANAGFKDDPRFSAYGVLPPKSKADYAFLLHGYYHLKHSGVMAIVLPHGILFRGAAEGKIRKKLLENGAIDAVIGLPANLFYNTSIPTTIVVLKKDKQDRDVLFIDASKDFEKVKTQNELRDEDVEKILTTYKERKDIDKYAHLASFDEIKENEFNLNIPRYVDTFEPEPEINLDEVSKELRETNEKIKENEIELISMLKDLTSKDEKITKGLNDFISVLEEDVK GT:EXON 1|1-529:0| BL:SWS:NREP 1 BL:SWS:REP 8->487|T1MD_MYCPN|7e-83|39.2|472/543| PROS 294->300|PS00092|N6_MTASE|PDOC00087| COIL:NAA 34 COIL:NSEG 1 COIL:REGION 475->508| SEG 489->498|nekikeneie| BL:PDB:NREP 2 BL:PDB:REP 17->75|1pk0B|5e-04|39.6|53/470| BL:PDB:REP 168->442|2okcB|4e-19|27.7|256/415| RP:PDB:NREP 1 RP:PDB:REP 124->529|2ar0B|4e-33|16.2|390/474| RP:PFM:NREP 2 RP:PFM:REP 8->140|PF12161|1e-11|39.8|113/129|HsdM_N| RP:PFM:REP 167->431|PF02384|2e-64|53.5|254/273|N6_Mtase| HM:PFM:NREP 2 HM:PFM:REP 167->472|PF02384|1.5e-118|50.7|298/311|N6_Mtase| HM:PFM:REP 8->157|PF12161|1.1e-23|29.0|131/132|HsdM_N| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF02384|IPR003356| GO:PFM GO:0006306|"GO:DNA methylation"|PF02384|IPR003356| GO:PFM GO:0008170|"GO:N-methyltransferase activity"|PF02384|IPR003356| RP:SCP:NREP 1 RP:SCP:REP 152->526|2ar0A1|4e-31|18.3|356/485|c.66.1.45| HM:SCP:REP 6->526|2ar0A1|1.2e-122|40.1|459/0|c.66.1.45|1/1|S-adenosyl-L-methionine-dependent methyltransferases| OP:NHOMO 866 OP:NHOMOORG 511 OP:PATTERN ----1--------------------1---1---1133--21121211113238-2-----11-----1 11---114---2-3-1-11-12--1-11111-1212--1--222-3-22----111----1-1-2-2---------111132---1--1223---------1-22-2-1----------------123244--3-1111-31--2-3-41232--11------121-3522--1----------2-------11-----12----1-----22-----311----1-1--111-22223222222222--111---112-1-2--122-2-2-1--111-1---1111-111111111111111111121111-543212221-3--1----21-1--1---1-1-----41132--12-1223111-11---212-111-----121---2--1-1-1111111111------------11-----112---1-2--1-----1-22133333333---1------------------121-2----------------2---1---------------2-11-11111-1--1-3-1113--214-6--61311-22211-1131-2111-28---5-1321--1-16--322-1-1-11--111-11211-13333332332-1-55-1415--1-1--42-3-2-5-12-2--5-1--16212-------1-45-2111111112--1---222-1111111111121-1221-11111-2122--1-1-111-1-1-------2----111--1---------1211112221-1-31333-21----121142-21-2-----11-1-421-21-1-21-1112221115131115-1122322223222--11--1111--------2-2---1--2--121----2-113-1111-2-1------21 -------------1------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 513 STR:RPRED 97.0 SQ:SECSTR ################TcTTcccccHHHHHccccGGGGccccccccccccEEETTEEEcTTTcHHHHHHHHHcccccEEEccccHHHTTTTcccccTTTcHHHHHHHEEEEEEEEcTTcEEEEHHccTTccHHHHHcccTHHHHHHHHHHHHHTccccHHHHHHHHTTcccccccHHHHHHHHHHHTccccccccHHHHHHHHHHHcccTcccTTccEEETTcTTTHHHHHHHHHHHHHHHTcEEEEEccHHHHHHHHHHHTTTccccGGGTccEEEccTTcHHHHTcccEEEEEEccccTTccccccccccccccccHGGGTTGGGGTHHHHHHHHHHEEEEEEEEEEEEHHHHHccTHHHHHHHHHHHHEEEEEEEEccccccccccccEEEEEEEEccTTcccccccEEEEEEccTccccccGGGTHHHHHHHcccTTcccccTTcTTcEEcccGGGTTccTTGGGccEEEEEHHHHHHTcccccccccEEcccccHHHHHHHHHHHHHHHHHHHTccccTTTHHH DISOP:02AL 1-3,183-185,187-187,527-530| PSIPRED ccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHccccccccEEEccccccccccccccccccEEEEcHHHccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHcccccEEEEEEccHHHHccccHHHHHHHHHHcccEEEEEEcccccccccccEEEEEEEEcccccccEEEEEcHHHcccccccccccHHHHHHHHHHHHcccccccEEEEEEHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcc //