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Lactobacillus salivarius UCC118 (lsal0)
Gene : hsdR
DDBJ      :hsdR         Type I restriction-modification system restriction subunit
Swiss-Prot:             

Homologs  Archaea  21/68 : Bacteria  323/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.152.1c.37.1
:1004 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   121->796 2w00B PDBj 4e-74 34.9 %
:RPS:PDB   249->408 3b6eA PDBj 4e-07 21.0 %
:RPS:SCOP  136->423 1rifA  c.37.1.23 * 2e-08 12.5 %
:RPS:SCOP  744->810 2af7A1  a.152.1.2 * 1e-05 31.7 %
:HMM:SCOP  197->427 1z3iX2 c.37.1.19 * 1.7e-32 22.2 %
:HMM:SCOP  383->692 2fwrA1 c.37.1.19 * 7.4e-07 17.3 %
:RPS:PFM   133->173 PF04313 * HSDR_N 2e-06 43.9 %
:RPS:PFM   255->425 PF04851 * ResIII 1e-10 32.5 %
:HMM:PFM   709->993 PF12008 * EcoR124_C 4.6e-45 21.6 264/270  
:HMM:PFM   254->424 PF04851 * ResIII 5.6e-33 27.9 165/184  
:HMM:PFM   4->199 PF04313 * HSDR_N 7.6e-21 29.1 158/185  
:HMM:PFM   622->670 PF00271 * Helicase_C 0.00085 16.3 49/78  
:BLT:SWISS 25->953 HSDR_STAEQ e-111 33.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99730.1 GT:GENE hsdR GT:PRODUCT Type I restriction-modification system restriction subunit GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(948193..951207) GB:FROM 948193 GB:TO 951207 GB:DIRECTION - GB:GENE hsdR GB:PRODUCT Type I restriction-modification system restriction subunit GB:NOTE COG0610 [V] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases GB:PROTEIN_ID ABD99730.1 GB:DB_XREF GI:90821091 GB:GENE:GENE hsdR LENGTH 1004 SQ:AASEQ MDLERDIEEKLINRLTQGVSQWTRRDDIKTVSQLWDNFFKILSKNNKAQLHDQPLTENEKNTIRTQITKPNFYQAAKFMVGANRQVKFHLKREDSTLPDADLTILDNTNIAGGTSVYEVIHQIQLARKFELDQDRRSDVTLLINGLPMIHIELKKPSESIIKAFNQIQKYINEAKFTDIFCFIKMFVVSNKTITRYISAGQSLREKFLTAWVDDKNQRVDNYLDFAREVLSIPQAHHMLADYTVLDNQAKNIILLRPYQIHAIKAIFKASREQKSGYIWHTTGSGKTLTSYKVARNLLQIPSIQKTVFLIDRQDLDVQTVSAFEAYAYNDTINVDDTDNSYDLANQLIDNEKKVIVTTRQKLQAIFRRIDEQKDNLSKKYLKLKDVKLAFVVDECHRAVTPSQKKELEGFFKNSLWYGFTGTPIMDKNARAENGNDARTTKGLYGDLLHTYTIKNAIADNAVLGFQITNIGQENVEDEENTEKWDKLYLKDVHMKAVVKKILNLAYVKQGLKDGNRYAAIFTTSSIKQAQKYYHIFRDIANGESEIKVPKVIKEKAVDFPRVAITYSISQNEKDSEDNQKDMKVSLKDYNAMFGTNFEMGQIDAYNRNVNDRLARKSKQYQAPSQQLDIVIVVDRLLTGFDSPTLSTLYIDRRPMNPQNMIQAFSRTNRIYDNTKQWGQIVTFQYPETYKKKIDEAIQLYSNGAATSDITAPVWTESRKKYIAARNGINQYLLDKKALDRIVDAPMEEMKAFARDFQKFDKAFVAIQTYDEYYNQDELPEKERISIPALTDEELEHLQGVYSNVIEKIRENGGDGGNGDNSDPEFDWEYELTPIYNNKIDERYITNLIQNVVSDTNESELFLNEKDVEEIDETIDNLEKINKPKADIIRSLWDKVKQNPQEYAGTSISQLVEDLINKENHRLMQEFADKYKVDYNDLRYVINNYVSDGDSTRQKGMAEMIDREAYEKFRDAYPNAESLLKWKHRMRQEVDTFYTDKIRPLMYTE GT:EXON 1|1-1004:0| BL:SWS:NREP 1 BL:SWS:REP 25->953|HSDR_STAEQ|e-111|33.8|854/930| SEG 811->822|nggdggngdnsd| BL:PDB:NREP 1 BL:PDB:REP 121->796|2w00B|4e-74|34.9|622/839| RP:PDB:NREP 1 RP:PDB:REP 249->408|3b6eA|4e-07|21.0|143/182| RP:PFM:NREP 2 RP:PFM:REP 133->173|PF04313|2e-06|43.9|41/142|HSDR_N| RP:PFM:REP 255->425|PF04851|1e-10|32.5|160/177|ResIII| HM:PFM:NREP 4 HM:PFM:REP 709->993|PF12008|4.6e-45|21.6|264/270|EcoR124_C| HM:PFM:REP 254->424|PF04851|5.6e-33|27.9|165/184|ResIII| HM:PFM:REP 4->199|PF04313|7.6e-21|29.1|158/185|HSDR_N| HM:PFM:REP 622->670|PF00271|0.00085|16.3|49/78|Helicase_C| GO:PFM:NREP 6 GO:PFM GO:0003677|"GO:DNA binding"|PF04313|IPR007409| GO:PFM GO:0004519|"GO:endonuclease activity"|PF04313|IPR007409| GO:PFM GO:0006304|"GO:DNA modification"|PF04313|IPR007409| GO:PFM GO:0003677|"GO:DNA binding"|PF04851|IPR006935| GO:PFM GO:0005524|"GO:ATP binding"|PF04851|IPR006935| GO:PFM GO:0016787|"GO:hydrolase activity"|PF04851|IPR006935| RP:SCP:NREP 2 RP:SCP:REP 136->423|1rifA|2e-08|12.5|255/282|c.37.1.23| RP:SCP:REP 744->810|2af7A1|1e-05|31.7|63/119|a.152.1.2| HM:SCP:REP 197->427|1z3iX2|1.7e-32|22.2|212/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 383->692|2fwrA1|7.4e-07|17.3|196/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 463 OP:NHOMOORG 345 OP:PATTERN ----1------------------1-11--1---2112--1111-1--1-2124--------1-----1 11----12---1-1------------------1--------1---2--1----1--------1-------------11-1-1---1---211---------1-21-111-----------------11-22--2-2111-11-------213------------11-2311-------------2-------11-----2-----------22-----211----1-1--11--11111111111111--111---111---2--111-2-1-1--1-1-----1-11------------1111111111111-212212221-3--------1-1--1-11--1-----3112---11-111111---1---211---------1----------1-1111111111------------1------1-1---1-------------1-21222222---1-------------------1-------------------2-------1----------------1-11-------1--2-12-111-5--1-21---221--111--1-11-14---1-11-1----13--121-1----1--111-1-2-1-11323331-11---33--2-2-------41-2-1-3--1-1--4----14--1-------1-11--1---11-12-------2------1-11111-1--111-11-1-----1-1-11-1-------------2----122-------------1--1-2231---21113111-----1-122-1--------11----1-------1---1-11------2---2---212111-2121--11--11-1--------2-1--1---2---21----1--22-1111-2-1------11 --------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 673 STR:RPRED 67.0 SQ:SECSTR ########################################################################################################################ccEEEEEccc###cccccccccccccccccccccccEEEEEEEEcccGGGccTHHHHHHGGGcccccccHHHHHHHHHHTcEEETTEEEEEEEEEcTHHHHHHHHHHHHHHcccHHHHccHHHHEcHTccccccccHHHHHHHHHHHHHHHTTccEEEEcccHHHHHHHHHHHHHHHHHTTccccEEEEEccHHHHHHHHHHTHHHHHTTTccEEEcccccccHHHHcHHHccEEEEEHHHHHHHHHTEcccccccccccccGGGccEEEEETTccHHHHHHHHHHHHTccTTcEEEEEEEEcTTccEEEEEEEHHHHHHHHTTTcccccGGGTTcTTTcTTcccTTGGGTcccccccTTTHHHHHHHGGcTTTTTEEcccTTTccccccccccEEEEcccHHHHHHHHHHHHTccccGGGGTHHHccGGGTTTTTcccccTTTTcHHHHHHHHHHHTccccccEEcccTHHHHHHHHHHHTTTcccEEEEcTTcTTHHHHcTTcccEEEEccccTTcccccTTccEEccEcccccHHHHHHHHHTTcccccTTccccccEEEEEEETTcHHHHHHHHHTccccHHHHHccccHHHHHcEEcTTTccEEccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHccccccccTTHHHHHHHT################################################################################################################################################################################################################ DISOP:02AL 1-1,814-816| PSIPRED cccHHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHcccEEEEEEEEcccccccEEEEEEEcccccccccEEEEEEEEEEccccccccccccEEEEEEccEEEEEEEEccccccHHHHHHHHHHHHccccccHHHHHEEEEEEEcccEEEEEcccccccccEEcccccccccccccHHHHHHHHccHHHHHHHHHHHEEEcccccccccccHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHccHHHHHccccccccEEEEEEEcHHHcccHHHHHHHHHHcccccEEEEEcccccccHHHHccccccccHHHHccccEEEccHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccHHHHcccccEEEEEEEEcccccHHHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHccccc //