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Lactobacillus salivarius UCC118 (lsal0)
Gene : infB
DDBJ      :infB         Bacterial Protein Translation Initiation Factor 2 (IF-2)
Swiss-Prot:IF2_LACS1    RecName: Full=Translation initiation factor IF-2;

Homologs  Archaea  68/68 : Bacteria  912/915 : Eukaryota  197/199 : Viruses  0/175   --->[See Alignment]
a.6.1b.43.3c.20.1c.37.1
:737 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   237->734 1zo1I PDBj e-140 49.8 %
:RPS:PDB   144->239 3cw2K PDBj 1e-14 14.4 %
:RPS:PDB   238->608 2b7cA PDBj 1e-36 15.4 %
:RPS:PDB   639->735 1d1nA PDBj 1e-23 68.0 %
:RPS:SCOP  162->207 1nd9A  a.6.1.6 * 5e-14 8.7 %
:RPS:SCOP  237->402 1g7rA4  c.37.1.8 * 3e-40 32.3 %
:RPS:SCOP  380->495 1n0uA1  b.43.3.1 * 5e-13 17.5 %
:RPS:SCOP  521->636 1g7rA3  c.20.1.1 * 2e-27 27.0 %
:RPS:SCOP  639->735 1d1nA  b.43.3.1 * 1e-24 68.0 %
:HMM:SCOP  235->429 1f60A3 c.37.1.8 * 9.3e-61 40.5 %
:HMM:SCOP  410->494 1g7sA1 b.43.3.1 * 5.2e-24 52.9 %
:HMM:SCOP  514->645 1g7sA3 c.20.1.1 * 4.9e-40 52.8 %
:HMM:SCOP  639->737 1d1nA_ b.43.3.1 * 9.8e-33 47.5 %
:RPS:PFM   162->208 PF04760 * IF2_N 1e-07 46.8 %
:RPS:PFM   243->351 PF00009 * GTP_EFTU 1e-15 44.0 %
:RPS:PFM   519->628 PF11987 * IF-2 3e-27 54.5 %
:HMM:PFM   241->400 PF00009 * GTP_EFTU 3.7e-44 40.0 160/189  
:HMM:PFM   522->628 PF11987 * IF-2 1.6e-42 58.9 107/109  
:HMM:PFM   1->50 PF04760 * IF2_N 2.1e-16 38.0 50/54  
:HMM:PFM   161->209 PF04760 * IF2_N 6.9e-17 40.8 49/54  
:HMM:PFM   428->489 PF03144 * GTP_EFTU_D2 6.5e-09 33.9 62/74  
:HMM:PFM   659->726 PF03144 * GTP_EFTU_D2 7.6e-07 26.9 67/74  
:BLT:SWISS 1->737 IF2_LACS1 0.0 100.0 %
:PROS 689->711|PS01176|IF2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99381.1 GT:GENE infB GT:PRODUCT Bacterial Protein Translation Initiation Factor 2 (IF-2) GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 613229..615442 GB:FROM 613229 GB:TO 615442 GB:DIRECTION + GB:GENE infB GB:PRODUCT Bacterial Protein Translation Initiation Factor 2 (IF-2) GB:NOTE COG0532 [J] Translation initiation factor 2 (IF-2; GTPase) GB:PROTEIN_ID ABD99381.1 GB:DB_XREF GI:90820742 GB:GENE:GENE infB LENGTH 737 SQ:AASEQ MVKKRIYELAKELGISSERVIEIAKKYDFKVTNHMSALDENEQNKIRGSISLKAKKKEHIQHNKNKDNFHSKKVQKSNTGSKDENNHKNVHKNNRKRSGSSMKENNNAKNGQRNNRNNRSNNKFKNKRNNNNKRNNNFKKGNPVPPRKNKPLPETLVYTVGMNVADIAKKIHREPAEIIKKLFMMGVMVNQNQSLDKDTIELLAADYGINAEEKVEVDVSDIDKFFEEEQNNTEHLEKRPPVVTIMGHVDHGKTTLLDKLRHTHVTEGEAGGITQHIGAYQVRHDDKIITFLDTPGHAAFTNMRARGADITDITVLVVAADDGVMPQTIEAINHAKAAGVPIIVAVNKIDKPGANPNHVMEQLTEYELIPESWGGDTIFVEISAKFGKNLDELLDMILLEAEMLELHANPNQRGAGSVIEARLDKGKGSVASLLVQQGTLHVGDPIVVGNTFGRVRTMVDARGYDIKKATPATPVEITGLNEVPDSGDRFITFEDEKTARAAGEKRAERALLKERSQTNHVTLDNLFDTLKEGELKEVGVIIKADVQGSVEALAQSFKKIDVEGVRVNIIHQAVGAINESDVTLAEASNAIIVGFNVRPTPLAKQQAESDNVDIRLHRVIYKAIDEIETAMKGMLEPEYQEKITGQVEIRQTYKVSKLGTIGGGYVIDGYIRRDSGVRVIRDGIVIYEGKLASLKRFKDDVKEVKQGYECGLMIEKYNDIKVGDQIEAYIMEEVPVD GT:EXON 1|1-737:0| SW:ID IF2_LACS1 SW:DE RecName: Full=Translation initiation factor IF-2; SW:GN Name=infB; OrderedLocusNames=LSL_0572; SW:KW Complete proteome; Cytoplasm; GTP-binding; Initiation factor;Nucleotide-binding; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->737|IF2_LACS1|0.0|100.0|737/737| GO:SWS:NREP 5 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0005525|"GO:GTP binding"|GTP-binding| GO:SWS GO:0003743|"GO:translation initiation factor activity"|Initiation factor| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| PROS 689->711|PS01176|IF2|PDOC00905| SEG 85->97|nnhknvhknnrkr| SEG 105->142|nnnakngqrnnrnnrsnnkfknkrnnnnkrnnnfkkgn| SEG 496->510|ektaraagekraera| BL:PDB:NREP 1 BL:PDB:REP 237->734|1zo1I|e-140|49.8|498/501| RP:PDB:NREP 3 RP:PDB:REP 144->239|3cw2K|1e-14|14.4|90/128| RP:PDB:REP 238->608|2b7cA|1e-36|15.4|371/437| RP:PDB:REP 639->735|1d1nA|1e-23|68.0|97/99| RP:PFM:NREP 3 RP:PFM:REP 162->208|PF04760|1e-07|46.8|47/52|IF2_N| RP:PFM:REP 243->351|PF00009|1e-15|44.0|109/183|GTP_EFTU| RP:PFM:REP 519->628|PF11987|3e-27|54.5|110/111|IF-2| HM:PFM:NREP 6 HM:PFM:REP 241->400|PF00009|3.7e-44|40.0|160/189|GTP_EFTU| HM:PFM:REP 522->628|PF11987|1.6e-42|58.9|107/109|IF-2| HM:PFM:REP 1->50|PF04760|2.1e-16|38.0|50/54|IF2_N| HM:PFM:REP 161->209|PF04760|6.9e-17|40.8|49/54|IF2_N| HM:PFM:REP 428->489|PF03144|6.5e-09|33.9|62/74|GTP_EFTU_D2| HM:PFM:REP 659->726|PF03144|7.6e-07|26.9|67/74|GTP_EFTU_D2| GO:PFM:NREP 4 GO:PFM GO:0003743|"GO:translation initiation factor activity"|PF04760|IPR006847| GO:PFM GO:0006413|"GO:translational initiation"|PF04760|IPR006847| GO:PFM GO:0003924|"GO:GTPase activity"|PF00009|IPR000795| GO:PFM GO:0005525|"GO:GTP binding"|PF00009|IPR000795| RP:SCP:NREP 5 RP:SCP:REP 162->207|1nd9A|5e-14|8.7|46/49|a.6.1.6| RP:SCP:REP 237->402|1g7rA4|3e-40|32.3|158/212|c.37.1.8| RP:SCP:REP 380->495|1n0uA1|5e-13|17.5|114/138|b.43.3.1| RP:SCP:REP 521->636|1g7rA3|2e-27|27.0|111/131|c.20.1.1| RP:SCP:REP 639->735|1d1nA|1e-24|68.0|97/99|b.43.3.1| HM:SCP:REP 235->429|1f60A3|9.3e-61|40.5|195/239|c.37.1.8|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 410->494|1g7sA1|5.2e-24|52.9|85/101|b.43.3.1|1/1|Translation proteins| HM:SCP:REP 514->645|1g7sA3|4.9e-40|52.8|125/131|c.20.1.1|1/1|Initiation factor IF2/eIF5b, domain 3| HM:SCP:REP 639->737|1d1nA_|9.8e-33|47.5|99/99|b.43.3.1|2/2|Translation proteins| OP:NHOMO 5197 OP:NHOMOORG 1177 OP:PATTERN 11111111111111121111111211111111111322222222121111111211112222112111 6763544444455644444-4444454444434444566634445352555345544344445446565453666565455541354533322333422344343545644444444444333344444444444355555334545465554333354444433534454544545544545444425534355555555544565555455555555446455444444465555555555555545555536655556545886655554444545544444444444455545545434444444343445544474544635366677773634466344443555644555566535544665353634633327665566454445646647776777677726646646666555555555555567643555455655554444444443344556555444342344333333333333344343443347666633333365555553355554533323534555634556644545563224334555555566622735567635574445666757766566766567555454454444543444445353344655445633545566635666655665545214644544244444334424444444444-44444444444444444454443444444444444443444444444443333434344434444334644444333353853665646544444554222122233356777756536534474444444444445433255555353355634344444333366546667664334353544544443-34344444444344444443232333333344 6611553-F5415764444344444444443333333333343444245444443454455545533225316565312425455354-46544654444334445238595B74783432354BA352BY6256933246256553413731B4A64359A45844777M55778687*B9888C89E3GC7674556 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 592 STR:RPRED 80.3 SQ:SECSTR ###############################################################################################################################################cccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccGGGHHHHHHHHHTcccTTccccHHHHHHHHHHHTccTTcccccGGGEEEEEEEEcTTccHHHHHHHHHHHHccccEEEEEETTEEEEEEcccEEEEEEcTTcTTccHHHHHHHHHHTTcccEEEcEEEEccGGEEETTTTEEEEEccTTcccEEEEcccGGGHHHHHHHHHHHHHHHTTTTccEEEEEccGGGTccHHHHHHHHHccccEEEEcccTTcccEEEEEEEEEETTTEEEEEEEEEEcEEEcccEEEETTTccEEEEEccccEEEEcEEETTcEEEEEccccccTTccEEEETTcccccccccccccEEEccEEEEEcccccccEEEcTTTcccccccEEEccccEEEEEEEEEccccccEEEEEEEEEEEccTTccEEHHHHHHHTTccTTTccccccEEEEEEEEcccTTTccHHHHHHHHHHHHHHHHHTcccEEEEEEEEEEEEEcTTTTTHHHHHHHHTTccEEEEEEETTEEEEEEEEccEEEETTTcccHHHHHHHHTTTcEEEEEEEEEEEccHHHHHHHHEccccc## DISOP:02AL 1-1,46-154,232-233,498-520,522-523,736-738| PSIPRED cccHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHcccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEcccEEEEEEEcccHHHHHHHHHHHHHHHcEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHccccccccccccEEEccccccccHHHHHHHHHHHccccccccccccccEEEEEEEEEEccEEEEEEEEEEccEEccccEEEEEcccccEEEEEccccEEEEEcccccEEEEEcccccHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHHHcccEEEEEEccccHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEcccEEEEEEccEEEEEEEEEEHHHccccHHHHccccEEEEEEEcccccEEccEEEEEEEEEEccc //