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Lactobacillus salivarius UCC118 (lsal0)
Gene : infC
DDBJ      :infC         Bacterial Protein Translation Initiation Factor 3 (IF-3)
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  887/915 : Eukaryota  27/199 : Viruses  0/175   --->[See Alignment]
d.15.8d.68.1
:174 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->66 1tifA PDBj 7e-21 71.7 %
:BLT:PDB   86->173 1tigA PDBj 2e-33 69.3 %
:RPS:PDB   85->174 2crqA PDBj 6e-19 23.3 %
:RPS:SCOP  9->71 1tifA  d.15.8.1 * 1e-23 73.0 %
:RPS:SCOP  86->173 1tigA  d.68.1.1 * 9e-31 69.3 %
:HMM:SCOP  6->81 1tifA_ d.15.8.1 * 2.3e-28 51.3 %
:HMM:SCOP  85->174 2ifeA_ d.68.1.1 * 4.1e-34 57.8 %
:RPS:PFM   10->71 PF05198 * IF3_N 3e-16 62.9 %
:RPS:PFM   85->170 PF00707 * IF3_C 1e-22 58.1 %
:HMM:PFM   86->171 PF00707 * IF3_C 8.6e-40 55.8 86/88  
:HMM:PFM   8->80 PF05198 * IF3_N 2.2e-33 58.9 73/76  
:BLT:SWISS 4->174 IF3_LACPL 5e-68 73.1 %
:PROS 61->74|PS00938|IF3
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99304.1 GT:GENE infC GT:PRODUCT Bacterial Protein Translation Initiation Factor 3 (IF-3) GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 545916..546440 GB:FROM 545916 GB:TO 546440 GB:DIRECTION + GB:GENE infC GB:PRODUCT Bacterial Protein Translation Initiation Factor 3 (IF-3) GB:NOTE COG0290 [J] Translation initiation factor 3 (IF-3) GB:PROTEIN_ID ABD99304.1 GB:DB_XREF GI:90820665 GB:GENE:GENE infC LENGTH 174 SQ:AASEQ MNIIAVDKMVNEGIRARELRLISDNGDQLGVKTKQEALKMAEDANLDLVLVAPKAKPPVAKIMDYGKYRFELQKKQREARKKQKVVNIKEVRLSPTIDTNDFNTKMKNARKFLSKGDKVKVSIRFKGRAITHKDIGRDVLNRFAEATEDVATVESKAKMDGRSMFLMLAPKTEK GT:EXON 1|1-174:0| BL:SWS:NREP 1 BL:SWS:REP 4->174|IF3_LACPL|5e-68|73.1|171/173| PROS 61->74|PS00938|IF3|PDOC00723| SEG 73->84|qkkqrearkkqk| BL:PDB:NREP 2 BL:PDB:REP 7->66|1tifA|7e-21|71.7|60/76| BL:PDB:REP 86->173|1tigA|2e-33|69.3|88/88| RP:PDB:NREP 1 RP:PDB:REP 85->174|2crqA|6e-19|23.3|90/112| RP:PFM:NREP 2 RP:PFM:REP 10->71|PF05198|3e-16|62.9|62/74|IF3_N| RP:PFM:REP 85->170|PF00707|1e-22|58.1|86/87|IF3_C| HM:PFM:NREP 2 HM:PFM:REP 86->171|PF00707|8.6e-40|55.8|86/88|IF3_C| HM:PFM:REP 8->80|PF05198|2.2e-33|58.9|73/76|IF3_N| GO:PFM:NREP 4 GO:PFM GO:0003743|"GO:translation initiation factor activity"|PF05198|IPR019814| GO:PFM GO:0006413|"GO:translational initiation"|PF05198|IPR019814| GO:PFM GO:0003743|"GO:translation initiation factor activity"|PF00707|IPR019815| GO:PFM GO:0006413|"GO:translational initiation"|PF00707|IPR019815| RP:SCP:NREP 2 RP:SCP:REP 9->71|1tifA|1e-23|73.0|63/76|d.15.8.1| RP:SCP:REP 86->173|1tigA|9e-31|69.3|88/88|d.68.1.1| HM:SCP:REP 6->81|1tifA_|2.3e-28|51.3|76/76|d.15.8.1|1/1|Translation initiation factor IF3, N-terminal domain| HM:SCP:REP 85->174|2ifeA_|4.1e-34|57.8|90/0|d.68.1.1|1/1|Translation initiation factor IF3, C-terminal domain| OP:NHOMO 947 OP:NHOMOORG 914 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112211111111111111111112241111111111111111111111111111111111111111111-111111111111111112211111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111113111111111111111111111111111111111111111111-111111111111111111111111111-1111111111111111111111111111111-111111111111111111111112211111111111111111111111111111111111111111-111111111111111111111-1111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111--111--1111111111111111111-11-11-111----1--11111-11111111111111111111111111111111-11111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111-11111-1111111111111111111111111111111111111111111-11111111111111111111111111111111 ------------------------------------------------------------------------------------------------------------1--11--1---------------------------------------1--------------2--1-21118242114112-211-1-11- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 150 STR:RPRED 86.2 SQ:SECSTR ######ccccGGGccccEEEEEcTTccEEEEEEHHHHHHHHHHTTcEEEEEETTccccEEEEEcHH##################cccEEEEEEETTccHHHHHHHHHHHHHHHHTTcEEEEEEEccTTccccHHHHHHHHHHHHTTcTTTcEEEEEEEEGGTEEEEEEEccccc DISOP:02AL 1-4,70-87,173-175| PSIPRED cccccccccccccccccEEEEEcccccEEccccHHHHHHHHHHccccEEEEcccccccEEEEEccHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccHHHHHHHHHHHHHHcccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHEEccccccccEEEEEEEEcccc //