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Lactobacillus salivarius UCC118 (lsal0)
Gene : murF
DDBJ      :murF         UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  868/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
c.59.1c.72.2c.98.1
:456 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->455 2am1A PDBj 1e-65 39.7 %
:RPS:PDB   7->452 1e8cB PDBj 7e-63 15.3 %
:RPS:SCOP  1->102 1gg4A3  c.98.1.1 * 3e-23 30.2 %
:RPS:SCOP  104->311 1gg4A4  c.72.2.1 * 1e-32 33.5 %
:RPS:SCOP  317->455 1gg4A1  c.59.1.1 * 2e-15 21.7 %
:HMM:SCOP  3->101 1e8cA1 c.98.1.1 * 2e-20 36.8 %
:HMM:SCOP  103->312 1gg4A4 c.72.2.1 * 3.9e-52 37.1 %
:HMM:SCOP  314->456 1gg4A1 c.59.1.1 * 6.9e-35 41.5 %
:RPS:PFM   24->98 PF01225 * Mur_ligase 3e-06 37.8 %
:RPS:PFM   109->292 PF08245 * Mur_ligase_M 2e-27 41.8 %
:RPS:PFM   317->401 PF02875 * Mur_ligase_C 3e-05 32.5 %
:HMM:PFM   109->293 PF08245 * Mur_ligase_M 9.8e-50 36.4 184/188  
:HMM:PFM   316->393 PF02875 * Mur_ligase_C 5.3e-14 25.0 76/91  
:HMM:PFM   25->98 PF01225 * Mur_ligase 9.2e-11 35.6 73/76  
:BLT:SWISS 16->456 MURF_BACSU 3e-85 40.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99168.1 GT:GENE murF GT:PRODUCT UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 387857..389227 GB:FROM 387857 GB:TO 389227 GB:DIRECTION + GB:GENE murF GB:PRODUCT UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase GB:NOTE COG0770 [M] UDP-N-acetylmuramyl pentapeptide synthase GB:PROTEIN_ID ABD99168.1 GB:DB_XREF GI:90820529 GB:GENE:GENE murF LENGTH 456 SQ:AASEQ MKMQLAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAENDGHKYVEAAINGGAVATLWQEDHSENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMTAAVLATQFNVHKTFANFNNEIGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHGLKEDGELVINGDEPLLTTKAKEVSQEVLTFGSLDNNDMCAMDIVSDATKTSFKVATWPEVDFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKNGAKILSDVYNSNPTAVKEVLYAFEQVPTEGKRIIVLGDMLELGEKAAEMHSNLAQAINPDRIDSVYLCGELMGHLAEKLREKFDETQIHHYQKDDLLTLTSDLKNELMSDDIVLLKASHGIHLENVVSELI GT:EXON 1|1-456:0| BL:SWS:NREP 1 BL:SWS:REP 16->456|MURF_BACSU|3e-85|40.1|434/457| SEG 419->428|ddlltltsdl| BL:PDB:NREP 1 BL:PDB:REP 2->455|2am1A|1e-65|39.7|428/442| RP:PDB:NREP 1 RP:PDB:REP 7->452|1e8cB|7e-63|15.3|430/484| RP:PFM:NREP 3 RP:PFM:REP 24->98|PF01225|3e-06|37.8|74/76|Mur_ligase| RP:PFM:REP 109->292|PF08245|2e-27|41.8|182/187|Mur_ligase_M| RP:PFM:REP 317->401|PF02875|3e-05|32.5|80/84|Mur_ligase_C| HM:PFM:NREP 3 HM:PFM:REP 109->293|PF08245|9.8e-50|36.4|184/188|Mur_ligase_M| HM:PFM:REP 316->393|PF02875|5.3e-14|25.0|76/91|Mur_ligase_C| HM:PFM:REP 25->98|PF01225|9.2e-11|35.6|73/76|Mur_ligase| GO:PFM:NREP 7 GO:PFM GO:0005524|"GO:ATP binding"|PF01225|IPR000713| GO:PFM GO:0009058|"GO:biosynthetic process"|PF01225|IPR000713| GO:PFM GO:0005524|"GO:ATP binding"|PF08245|IPR013221| GO:PFM GO:0009058|"GO:biosynthetic process"|PF08245|IPR013221| GO:PFM GO:0005524|"GO:ATP binding"|PF02875|IPR004101| GO:PFM GO:0009058|"GO:biosynthetic process"|PF02875|IPR004101| GO:PFM GO:0016874|"GO:ligase activity"|PF02875|IPR004101| RP:SCP:NREP 3 RP:SCP:REP 1->102|1gg4A3|3e-23|30.2|96/98|c.98.1.1| RP:SCP:REP 104->311|1gg4A4|1e-32|33.5|200/206|c.72.2.1| RP:SCP:REP 317->455|1gg4A1|2e-15|21.7|129/135|c.59.1.1| HM:SCP:REP 3->101|1e8cA1|2e-20|36.8|95/101|c.98.1.1|1/1|MurE/MurF N-terminal domain| HM:SCP:REP 103->312|1gg4A4|3.9e-52|37.1|210/214|c.72.2.1|1/1|MurD-like peptide ligases, catalytic domain| HM:SCP:REP 314->456|1gg4A1|6.9e-35|41.5|130/135|c.59.1.1|1/1|MurD-like peptide ligases, peptide-binding domain| OP:NHOMO 1398 OP:NHOMOORG 872 OP:PATTERN -------------------------------------------------------------------- 1221211111111111111-11111111111112121111111211111221111111111112111111111111111112222222444314221--323331322221111111121111123321233231222233---211111111111111111111111111111111111111111111212334464646635664451433336553325321222232224222222222222222234232332232222111122222222222222221122222212222222111111111111122222222223541322222222221111422323333122323343222313343312113-111121221211112221312233323233332-111111112123222222122221111211121111111111111111111112111------1111111111111111111111211112222222222211111221211111121111111111121111112122211123211111111124111133413121211111212121-223111122211111-11111111111111111111222321223122221111122111111221111-11211-1-1-111111111111111111-11111111111111111111111111212111111111111111111111111111111111111111233333111111112111111112122222222222422222222222222222232221111111112222311111333111111111111111121211111111111111211--------------------------3322211111211 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----2------3-----2------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 455 STR:RPRED 99.8 SQ:SECSTR ccccHHcHHHHHTccTTcTTccccccccEccGGGccTTcEEEEccccccGGGGHHHHHHTTccEEEEEcTTTcEEETTEEEEEETTHHHHHHHHHHHHTTcGGGcHHHHHHHTTccEEEcTTccEETTcccEcccccccccHHHHHHHHHHHHHTTccEEEEccHccHHHHTTTTTTccccEEEEcccccccHHHHccHHHHHHHHHGGHHHcccccEEEEETTcHHHHHHHTTcTTcEEEEcccccTEEEEEEEEEccccEEEEEEETTccEEEEEcccHHHHHHHHHHHHHHHHTTccHHHHHHHGGGccccTTcEEEccTTcccEEEEEEccccHHHHHHHHHHHHHTcccccEEEEEccccccccTHHHHHHHHHHHccEEEEccccccTccHHHHHHHHHTTccTGGcETccEEccHHHHHHHHHHccTTcEEEEEccTTccEEEETHHH# DISOP:02AL 1-1| PSIPRED ccccHHHHHHHcccccccccccccEEEEEEcccccccccEEEEEcccccHHHHHHHHHHcccEEEEEcccccccccccccEEEEccHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHcccccccEEEEEEEcccccHHHHHHcccccEEEEEccccHHHHHHcccHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHccccEEEEEEcccccEEEEEEEEcccEEEEEEEccccEEEEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccEEEEEccccEEEEEEcccccHHHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHcccccEEEEEccccccHHHHHHHHc //