[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Lactobacillus salivarius UCC118 (lsal0)
Gene : nagD
DDBJ      :nagD         N-acetylglucosamine catabolic protein
Swiss-Prot:             

Homologs  Archaea  35/68 : Bacteria  377/915 : Eukaryota  180/199 : Viruses  0/175   --->[See Alignment]
c.108.1
:257 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->256 3eprA PDBj 1e-78 57.4 %
:RPS:PDB   3->256 2cfsA PDBj 4e-39 28.0 %
:RPS:SCOP  6->256 1wviA  c.108.1.14 * 1e-82 54.0 %
:HMM:SCOP  5->258 1ys9A1 c.108.1.14 * 2.5e-65 37.2 %
:HMM:PFM   7->218 PF00702 * Hydrolase 9.8e-14 23.5 183/192  
:BLT:SWISS 3->254 NAGD_STAES 2e-61 48.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99246.1 GT:GENE nagD GT:PRODUCT N-acetylglucosamine catabolic protein GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 476271..477044 GB:FROM 476271 GB:TO 477044 GB:DIRECTION + GB:GENE nagD GB:PRODUCT N-acetylglucosamine catabolic protein GB:NOTE COG0647 [G] Predicted sugar phosphatases of the HAD superfamily GB:PROTEIN_ID ABD99246.1 GB:DB_XREF GI:90820607 GB:GENE:GENE nagD LENGTH 257 SQ:AASEQ MDLEKYKGYLIDLDGTMYKGKIKIPAAKRFIERLQEKDIPFLFLTNNSTQTPEAVVENLGMNFDIHVGVENVYTTALATADYVADLDENKRKVYAIGELGLKQALMDKGFRFEEVTPDYVVVGLDYDVTYHKFELATLAIKRGAKFIGTNPDTNLPNERGLVPGAGSVIALVERATQQVATYVGKPEKIIMEKALKKMNMKADDVIMVGDNYNTDIKAGIASDIDTLLVYTGVSTREDVAKEKIKPTYEINSLDEWQ GT:EXON 1|1-257:0| BL:SWS:NREP 1 BL:SWS:REP 3->254|NAGD_STAES|2e-61|48.8|250/259| BL:PDB:NREP 1 BL:PDB:REP 6->256|3eprA|1e-78|57.4|249/260| RP:PDB:NREP 1 RP:PDB:REP 3->256|2cfsA|4e-39|28.0|254/291| HM:PFM:NREP 1 HM:PFM:REP 7->218|PF00702|9.8e-14|23.5|183/192|Hydrolase| RP:SCP:NREP 1 RP:SCP:REP 6->256|1wviA|1e-82|54.0|250/253|c.108.1.14| HM:SCP:REP 5->258|1ys9A1|2.5e-65|37.2|253/0|c.108.1.14|1/1|HAD-like| OP:NHOMO 814 OP:NHOMOORG 592 OP:PATTERN 11-11-1111111111---1---121212-11-----------11--11-----1111111---1--- ---1222222212121111-11--131111113333222213211421221222211211222322222221111111----1112--------------------1-21--------------------------22222---331-----------------------------------------11-113111111111111111421112111112121111111121111111111111111111111111111111111111111111-11111111111111111111211111111111111111111111111111-2-------1-1-------------1-----------------1-2-1-1-----------1------------------------------------------------11--------------------11------------------------------------1----------------------1---------------------------------2-12-----------1----1----11--111---------------------1-111111---------1-12---11--------1111111111111111-111----1-1------11--1111111111111-1111111111111111111111-----11111111111111112111--11--111-11111111---------------11---------------------------11111-----------21---------1------------------------------11--1111------------------------------------1111111111--- 11--111-1---1131111122211111111111111111111111111111-111111111122111121121211-1112223311-21111112221211433-2213442331212--2222-3-272-23312--3-222111-121152322222223321631235231221G2221122431321311111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 257 STR:RPRED 100.0 SQ:SECSTR ccHHHccEEEEcccTTTEETTEEcTTHHHHHHHHHHTTcEEEEEEccccccHHHHHHHHHHTTcccccGGGEEEHHHHHHHHHHHccccccEEEEEccHHHHHHHHHTTcEETTccEEEEEEcccTTccHHHHHHHHHHHTTTcEEEEcccccEEEcTTccEEcHHHHHHHHHHHHTcccEEccTTcTHHHHHHTTcccccGGGEEEEEccTTTHHHHHHHTTcEEEEETTccccHHHHHHGGGcccEEEccGGGGH DISOP:02AL 1-1| PSIPRED cccccccEEEEEccccEEEcccccHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHccccccHHHcccHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHcccEEccccccEEEEEccccccHHHHHHHHHHHHccccEEEEccccEEEccccEEEcccHHHHHHHHHHccccEEEccccHHHHHHHHHHccccHHHEEEEcccHHHHHHHHHHccccEEEEccccccHHHHHHccccccEEEccHHHcc //