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Lactobacillus salivarius UCC118 (lsal0)
Gene : ndh
DDBJ      :ndh          NADH dehydrogenase
Swiss-Prot:             

Homologs  Archaea  26/68 : Bacteria  579/915 : Eukaryota  136/199 : Viruses  0/175   --->[See Alignment]
c.3.1
:401 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   3->326 2bc0A PDBj 1e-11 26.2 %
:RPS:PDB   19->361 1djnA PDBj 2e-19 15.1 %
:RPS:SCOP  2->170 1fcdA1  c.3.1.5 * 8e-16 19.1 %
:RPS:SCOP  158->335 1fl2A1  c.3.1.5 * 3e-15 13.8 %
:HMM:SCOP  1->205 1fcdA1 c.3.1.5 * 1.2e-32 30.8 %
:HMM:SCOP  148->338 1hyuA1 c.3.1.5 * 6e-20 27.7 %
:RPS:PFM   3->280 PF07992 * Pyr_redox_2 3e-06 29.5 %
:HMM:PFM   4->299 PF07992 * Pyr_redox_2 2e-28 26.4 182/202  
:BLT:SWISS 2->397 Y823_STAAW 3e-80 43.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99834.1 GT:GENE ndh GT:PRODUCT NADH dehydrogenase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1047052..1048257) GB:FROM 1047052 GB:TO 1048257 GB:DIRECTION - GB:GENE ndh GB:PRODUCT NADH dehydrogenase GB:NOTE COG1252 [C] NADH dehydrogenase, FAD-containing subunit GB:PROTEIN_ID ABD99834.1 GB:DB_XREF GI:90821195 GB:GENE:GENE ndh LENGTH 401 SQ:AASEQ MKEVLVLGAGYAGLKAVRNLQKEVGDNAHITLVDMNDYHYEATELHEVAAGSVDKNKITYPIKDVLNNKVKFIQDEVVKVDADKKTVELKNSGQLRYDYCVLALGFVSETFGIKGALDNALQMTDIDQAVAIHEHIVETMKKYRETQDKEYLNIVVCGAGFTGIELAGALVDERPKYAKLAGVDESEISITIVEAATKLLPMFSENLANYGVSLVKSLGVKIMTGCMIKEIQDGRVMYATQDNEELQAVPGKTIIWTTGVSGSPVMGESGFKERRGRVIVNDNLLDPDHDDLYIIGDVSALMDKATDRPYPTTAQIATRMGAYVGHAIAQRLKGEVPEPFSYNSLGTVASVGNTHAFGLVGKKEYKGFPASFVKKMIMNKSLADIGGAKELFAKGRFDLYH GT:EXON 1|1-401:0| BL:SWS:NREP 1 BL:SWS:REP 2->397|Y823_STAAW|3e-80|43.1|392/402| SEG 281->292|ndnlldpdhddl| BL:PDB:NREP 1 BL:PDB:REP 3->326|2bc0A|1e-11|26.2|301/472| RP:PDB:NREP 1 RP:PDB:REP 19->361|1djnA|2e-19|15.1|312/729| RP:PFM:NREP 1 RP:PFM:REP 3->280|PF07992|3e-06|29.5|244/275|Pyr_redox_2| HM:PFM:NREP 1 HM:PFM:REP 4->299|PF07992|2e-28|26.4|182/202|Pyr_redox_2| RP:SCP:NREP 2 RP:SCP:REP 2->170|1fcdA1|8e-16|19.1|162/186|c.3.1.5| RP:SCP:REP 158->335|1fl2A1|3e-15|13.8|160/184|c.3.1.5| HM:SCP:REP 1->205|1fcdA1|1.2e-32|30.8|185/0|c.3.1.5|1/2|FAD/NAD(P)-binding domain| HM:SCP:REP 148->338|1hyuA1|6e-20|27.7|166/0|c.3.1.5|2/2|FAD/NAD(P)-binding domain| OP:NHOMO 1379 OP:NHOMOORG 741 OP:PATTERN ---1-111222222511-------31122111----------------1------------1-1--12 2121421111111134422-22113522222224444396132411211111221111--22112223632-----------1-12--111--1---1111111231221--------------1211221221-12221----113551333123322212223137653121111121111111-----22333333333333333322332333322223222222223422222212222222222222221-11-1---221122-1-1112221111------------------------1------11---1111---------------1---------1-11--2----1--1-----1----1-11---------14211-11-12111111111111-11211112112-1111233111221-----2-1111---22222222-1111-------------------------------------1111124332332----3353-----14231252-1111-311111--2-22-11111----------112-1-11---1--1111----211---112122--1---1-----1-1-------1--1-3311111--11111111112311122133222--1----------21111111111111111-1111111111111-111111111111112111111111111111111111111111111111111---------1111111111111-11111-1---11111-1---1122223121223231111-11-11111-222211111211111111111111--------331111---------------1---1--------1-----------1---1-12- 1-11431-311-1235431344354543343243323333333122444646462233333221123322233213323333332222-42343332323324454-122-------------------------------------------------111-11--------112332M11124658A2723421221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 399 STR:RPRED 99.5 SQ:SECSTR ccccTTcccccccHHHHHHHHHHHHHHHTTcEEEEEcccccTTTTHHHHTTcTTcGGGGHHHHHHHHHHHHHHTTcTTcEEcccccccHHHHHTccccEEEEcccEEEccccccTTTccccTTccTTcTTEEcHHHHHHTccccTTccccEEEEEEcccccHHHHHHHHHHHTTcEETcHHHEEEEEccEEEEEcccTTTHHHHTTcHHHHHHHHHHTTcEEETTEEEEEEETTEEEEEETTccccccccccTTccccccccccEEEEccEHHHHHHHHTTHHHHHTTccEEEEcGGGTcEEcTTTcTTccccHHHHHHHHHHHHHTTTcccTTcccccccccccccccTTccccTTccccHcGGGEEEEEEEEccGGGTTTTccccTTcEEEEEEEEE## PSIPRED ccEEEEEcccHHHHHHHHHHHHHcccccEEEEEcccccccccccHHHHHcccccHHHHHccHHHHHHcccEEEEEEEEEEEccccEEEEccccEEEccEEEEEcccccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccHHHHHccHHHHHHHHHHHHHcccEEEcccEEEEEEccEEEEEEcccccEEEEEccEEEEcccccccHHHHHcccccccccEEEcccccccccccEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEcccEEEEEEccccEEEEEccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //