[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Lactobacillus salivarius UCC118 (lsal0)
Gene : nifS.1
DDBJ      :nifS         Cysteine desulfurase / Selenocysteine lyase
Swiss-Prot:             

Homologs  Archaea  38/68 : Bacteria  894/915 : Eukaryota  195/199 : Viruses  0/175   --->[See Alignment]
c.67.1
:380 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   4->378 1p3wB PDBj 7e-58 41.2 %
:RPS:PDB   1->380 1ecxA PDBj 9e-41 32.7 %
:RPS:SCOP  4->374 1elqA  c.67.1.3 * 1e-52 20.7 %
:HMM:SCOP  2->382 1c0nA_ c.67.1.3 * 1.2e-98 37.1 %
:RPS:PFM   4->277 PF00266 * Aminotran_5 2e-45 41.3 %
:HMM:PFM   4->370 PF00266 * Aminotran_5 1.6e-83 34.6 353/371  
:BLT:SWISS 1->380 ISCS1_BACSU 3e-93 45.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99670.1 GT:GENE nifS.1 GT:PRODUCT Cysteine desulfurase / Selenocysteine lyase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 879433..880575 GB:FROM 879433 GB:TO 880575 GB:DIRECTION + GB:GENE nifS GB:PRODUCT Cysteine desulfurase / Selenocysteine lyase GB:NOTE COG1104 [E] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes GB:PROTEIN_ID ABD99670.1 GB:DB_XREF GI:90821031 GB:GENE:GENE nifS LENGTH 380 SQ:AASEQ MKYIYLDNAGTTPMATKVVEKMTETMTNTFGNASAVNYYGRQARAILDNSRHVIAESINAKNDNEIVFTSGGTESDNTAIIQTAMARKNEGRHLITTAIEHEAVLKPMAYLEQEGFEVTYLPVDEYGQINLDDLKQAIRPDTILVSIMMGNNEVGSHLPIKEIGEIVAPTNAWFHTDSVQTYGAIDIDVQDLKVDLLSVSAHKLNGPKMLGFLYRRDGINFPSLIKGGDQELKRRAGTENVPAIAGFAEAVSLLPAEVKEEHRQKYLSFKHQLVDGLKENGIDFEINGHLEENQLPQIISIWFKGFASDSLLTNLDLSGISAAAGSACTAGSLEPSHVLAAMYSEDSPRVAESLRFSFGINNTSEDIDYLIKTLVKIIKK GT:EXON 1|1-380:0| BL:SWS:NREP 1 BL:SWS:REP 1->380|ISCS1_BACSU|3e-93|45.4|377/379| SEG 318->332|sgisaaagsactags| BL:PDB:NREP 1 BL:PDB:REP 4->378|1p3wB|7e-58|41.2|362/385| RP:PDB:NREP 1 RP:PDB:REP 1->380|1ecxA|9e-41|32.7|361/364| RP:PFM:NREP 1 RP:PFM:REP 4->277|PF00266|2e-45|41.3|271/359|Aminotran_5| HM:PFM:NREP 1 HM:PFM:REP 4->370|PF00266|1.6e-83|34.6|353/371|Aminotran_5| GO:PFM:NREP 1 GO:PFM GO:0008152|"GO:metabolic process"|PF00266|IPR000192| RP:SCP:NREP 1 RP:SCP:REP 4->374|1elqA|1e-52|20.7|334/381|c.67.1.3| HM:SCP:REP 2->382|1c0nA_|1.2e-98|37.1|364/0|c.67.1.3|1/1|PLP-dependent transferases| OP:NHOMO 2797 OP:NHOMOORG 1127 OP:PATTERN 111-2-----------1------211111112111-------15624512443111-1111---2-43 3441322233322353322-22332422222222224322244322322223543214115242333433211111114353321221111111222212252434354422222222222222311111111111333331-13435444443334333333343286643333333233332112221134444444445444444455442444444443344444434433333333333333343333422323332333333333331113233333333333333333333333333333333333333333333327455444444434433442333633445432155433133246542223315422222222434442224443422222222222-33333333352222223332232244222222242232133333333144334332222222222-222222222222222222133424111112344422444422114443224351232112223212224222212313431111111113223433222111112111113633445623333333321111111111121111111111-1342233223325332222232222232342232-2221211111133432333333333333-333333333333333333335343673333233333333332353332323323333533333542221333332222422232222222122222222221212111533323333324344344422222222213332222223342211111111111111113222333211111111421111-1---1---1----111--111-221122222512 1111112-7321-111122112111211111111111111111111111111111111111111111111111111111111111111-1111111111112111212324232233123222222242FT2-3222212312222221122132222222124131111A22332233Y3333242521223322223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 380 STR:RPRED 100.0 SQ:SECSTR cccEEccTTTcccccHHHHHHHHHHHHTccccTTcccHHHHHHHHHHHHHHHHHHHHHTccGGGEEEEEccHHHHHHHHHHHHHHTTTTTccEEEEcTTccHHHHHHHHHHHHTTcEEEEccccTTccccHHHHHHHccTTEEEEEEEcccTTTcccccHHHHHHHHHHHcTTcEEEEEcTTTTcccccTTTcccEEEEEGGGTTcccccEEEEEcTTcccccccccccTTTTTccccccHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTcEEcccGGcccGccTTEEEEEcTTccHHHHHHHHHHTTEEccEEEccccEEEETcccHHHHTTccHHHHTTcEEEEccTTccHHHHHHHHHHHHHHHHH PSIPRED ccEEEEEccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHcccccEEEEEEcccccccEEccHHHHHHHHHHcccEEEEEcccccccccccHHHccccEEEEEHHHccccccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccEEEEEEccccHHHHHHHHHHcccccccccccccccccccHHHHHcccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHc //