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Lactobacillus salivarius UCC118 (lsal0)
Gene : nusA
DDBJ      :nusA         N utilization substance protein A
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  909/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
b.40.4d.202.1d.52.3
:375 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->339 1hh2P PDBj 3e-87 48.9 %
:RPS:PDB   40->139 2abjA PDBj 2e-18 7.1 %
:RPS:PDB   129->230 2cqoA PDBj 6e-11 18.9 %
:RPS:PDB   254->340 2cxcA PDBj 7e-26 23.0 %
:RPS:SCOP  1->124 1hh2P4  d.202.1.1 * 2e-35 48.4 %
:RPS:SCOP  132->198 1k0rA1  b.40.4.5 * 4e-17 31.3 %
:RPS:SCOP  200->275 1hh2P2  d.52.3.1 * 3e-19 50.0 %
:RPS:SCOP  277->343 1hh2P3  d.52.3.1 * 1e-11 59.7 %
:HMM:SCOP  1->126 1hh2P4 d.202.1.1 * 1e-41 57.9 %
:HMM:SCOP  131->198 1k0rA1 b.40.4.5 * 6.4e-19 45.6 %
:HMM:SCOP  199->276 1hh2P2 d.52.3.1 * 1.4e-30 60.3 %
:HMM:SCOP  278->344 1k0rA3 d.52.3.1 * 6.6e-20 53.7 %
:RPS:PFM   15->125 PF08529 * NusA_N 1e-23 60.4 %
:HMM:PFM   4->124 PF08529 * NusA_N 4.9e-47 58.7 121/122  
:HMM:PFM   135->194 PF00575 * S1 1.4e-10 26.7 60/74  
:HMM:PFM   306->340 PF00013 * KH_1 7.7e-05 37.1 35/57  
:HMM:PFM   168->235 PF05685 * DUF820 0.00055 23.9 67/111  
:BLT:SWISS 35->347 NUSA_BACSU e-119 65.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99378.1 GT:GENE nusA GT:PRODUCT N utilization substance protein A GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 611433..612560 GB:FROM 611433 GB:TO 612560 GB:DIRECTION + GB:GENE nusA GB:PRODUCT N utilization substance protein A GB:NOTE COG0195 [K] Transcription elongation factor GB:PROTEIN_ID ABD99378.1 GB:DB_XREF GI:90820739 GB:GENE:GENE nusA LENGTH 375 SQ:AASEQ MSKELLNALNALEVEKGVKKEIVIEALEAALVSAYKRNYGQAQNVEVEFDKIAGNIHVYAVKEVVNEVYDSQLEISLKSALEINRAYEIGDTIREEVTPKDFGRIAAQTAKQVIMQRVRKEEREVIYNEYVQYEQEIVTGEVERRDNKFVYVNLGRIEAVLSRQDQIPGEEYKSHDKIKVYIYKVENTSKGPQVFVSRSHPDLLRRLFEQEIPEIFDGTVEIVSISREAGDRAKVAVRSNEDGVDPVGTCVGPRGERVQAIVNELKGENMDIVEWREDPAEYIANALNPAKVLDVRFDDENEHACTVVVPDDQLSLAIGKRGQNARLAARLTGYKIDIKSESDAADLNNVEADNNDIDDEDQLMSDSSSNIIEEE GT:EXON 1|1-375:0| BL:SWS:NREP 1 BL:SWS:REP 35->347|NUSA_BACSU|e-119|65.1|312/371| SEG 4->13|ellnalnale| BL:PDB:NREP 1 BL:PDB:REP 15->339|1hh2P|3e-87|48.9|325/344| RP:PDB:NREP 3 RP:PDB:REP 40->139|2abjA|2e-18|7.1|99/366| RP:PDB:REP 129->230|2cqoA|6e-11|18.9|95/119| RP:PDB:REP 254->340|2cxcA|7e-26|23.0|87/138| RP:PFM:NREP 1 RP:PFM:REP 15->125|PF08529|1e-23|60.4|111/122|NusA_N| HM:PFM:NREP 4 HM:PFM:REP 4->124|PF08529|4.9e-47|58.7|121/122|NusA_N| HM:PFM:REP 135->194|PF00575|1.4e-10|26.7|60/74|S1| HM:PFM:REP 306->340|PF00013|7.7e-05|37.1|35/57|KH_1| HM:PFM:REP 168->235|PF05685|0.00055|23.9|67/111|DUF820| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF08529|IPR013735| GO:PFM GO:0005515|"GO:protein binding"|PF08529|IPR013735| GO:PFM GO:0031554|"GO:regulation of transcription termination"|PF08529|IPR013735| RP:SCP:NREP 4 RP:SCP:REP 1->124|1hh2P4|2e-35|48.4|124/126|d.202.1.1| RP:SCP:REP 132->198|1k0rA1|4e-17|31.3|67/76|b.40.4.5| RP:SCP:REP 200->275|1hh2P2|3e-19|50.0|76/78|d.52.3.1| RP:SCP:REP 277->343|1hh2P3|1e-11|59.7|67/68|d.52.3.1| HM:SCP:REP 1->126|1hh2P4|1e-41|57.9|126/126|d.202.1.1|1/1|Transcription factor NusA, N-terminal domain| HM:SCP:REP 131->198|1k0rA1|6.4e-19|45.6|68/0|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 199->276|1hh2P2|1.4e-30|60.3|78/0|d.52.3.1|1/1|Prokaryotic type KH domain (KH-domain type II)| HM:SCP:REP 278->344|1k0rA3|6.6e-20|53.7|67/67|d.52.3.1|1/1|Prokaryotic type KH domain (KH-domain type II)| OP:NHOMO 916 OP:NHOMOORG 915 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1---1-111---------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 354 STR:RPRED 94.4 SQ:SECSTR #############cccccccGGGGGcTTccHHHHHHHcccHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHTTcEEEEEEEETTTEEEEEEEEEETTEEETEcTTGGGTTHHHHHHHHHHHHHHTTccccTTTcEEEEEEEccHHHHHTTcEEcEEEEEcGGGccTTccccTTcEEEEEEEEEEccccccEEEEEcccHHHHHHHHHHHcHHHHHTcEEEEEEEEETTTEEEEEEEEccTTccHHHHHHcGGGGHHHHHHHHHHccEEEEEEccccHHHHHHHHcTTccEEEEEEEETTEEEEEEEEcTTTHHHHHcGGGHHHHHHHHHHHHHHcEEEcccccccccHHHHHHHHHHHHHHHHHc######## DISOP:02AL 1-4,370-376| PSIPRED ccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccEEEEEEEEEccccccccccccHHHHHHHccccccccEEEEEccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEcccEEEEcHHHHccccccccccEEEEEEEEEEccccccEEEEEEccHHHHHHHHHHHcHHHHccEEEEEEEEEcccccEEEEEEEccccccEEEEEEccccHHHHHHHHHHccccEEEEEccccHHHHHHHHccccEEEEEEEEcccccEEEEEEcHHHccHHcccccHHHHHHHHHHcccccEEEHHHHHHHHHHHHcccccccHHHHHHHccccccccc //