[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Lactobacillus salivarius UCC118 (lsal0)
Gene : potC
DDBJ      :potC         Spermidine/putrescine transport system permease protein
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  575/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:278 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   42->205 2onkC PDBj 2e-06 22.7 %
:RPS:PDB   159->194 3dhwA PDBj 1e-09 30.6 %
:RPS:SCOP  13->205 2r6gG1  f.58.1.1 * 2e-19 22.9 %
:RPS:PFM   108->205 PF00528 * BPD_transp_1 5e-07 35.7 %
:HMM:PFM   78->256 PF00528 * BPD_transp_1 4.4e-19 24.0 167/185  
:HMM:PFM   61->92 PF02960 * K1 0.00063 34.4 32/130  
:BLT:SWISS 29->262 POTC_SHIFL 4e-30 32.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD98932.1 GT:GENE potC GT:PRODUCT Spermidine/putrescine transport system permease protein GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 132262..133098 GB:FROM 132262 GB:TO 133098 GB:DIRECTION + GB:GENE potC GB:PRODUCT Spermidine/putrescine transport system permease protein GB:NOTE COG1177 [E] ABC-type spermidine/putrescine transport system, permease component II GB:PROTEIN_ID ABD98932.1 GB:DB_XREF GI:90820293 GB:GENE:GENE potC LENGTH 278 SQ:AASEQ MKKINWKNVYLWVMFIFLYAPIFYLIFYAFNSGETMNRFEGFSWVHFQELFADTRLLIILLETFILAFLSALIATMIGTFGAISIYRYQKRRTRLALLSLNNILIVSPDVIIGASFLILFTLLGSWIHSLSLGFASVLLSHIAFSIPIVVLMVLPKLQEMQDSLTMAAYDLGANHWQVLTNVVLPYLTPGIIAGYFMAFTYSLDDFAVTFFVTGNGFTTLSVEIYSRARRGVSLEINALSALVFLFSLVLVIGYYFISRDNSANHRRQGKQVRKGVLR GT:EXON 1|1-278:0| BL:SWS:NREP 1 BL:SWS:REP 29->262|POTC_SHIFL|4e-30|32.5|228/264| TM:NTM 6 TM:REGION 9->31| TM:REGION 58->80| TM:REGION 99->121| TM:REGION 134->156| TM:REGION 176->198| TM:REGION 233->255| SEG 206->219|favtffvtgngftt| SEG 238->251|alsalvflfslvlv| BL:PDB:NREP 1 BL:PDB:REP 42->205|2onkC|2e-06|22.7|163/252| RP:PDB:NREP 1 RP:PDB:REP 159->194|3dhwA|1e-09|30.6|36/203| RP:PFM:NREP 1 RP:PFM:REP 108->205|PF00528|5e-07|35.7|98/195|BPD_transp_1| HM:PFM:NREP 2 HM:PFM:REP 78->256|PF00528|4.4e-19|24.0|167/185|BPD_transp_1| HM:PFM:REP 61->92|PF02960|0.00063|34.4|32/130|K1| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00528|IPR000515| GO:PFM GO:0006810|"GO:transport"|PF00528|IPR000515| GO:PFM GO:0016020|"GO:membrane"|PF00528|IPR000515| RP:SCP:NREP 1 RP:SCP:REP 13->205|2r6gG1|2e-19|22.9|192/284|f.58.1.1| OP:NHOMO 1082 OP:NHOMOORG 591 OP:PATTERN --1-------------2-11-1-11--11----1---------------------1--1-1------- -11-2----------------1---3------1111----1111-----11-----------1--1-2-21-------1---1-----1111-2------------------------------1-----------11111---11--1---122----------213221--------------1------1-111-13431232313-111--22212221111111114311111111111111-211121111111-21222221112-12211111121111111111111111111111111111111111111111--111111111111111--1231114132212-221--1---------1----1111-------4462221111233443442445-1111111-5B1-75552355554323---2453244735--------1----113--------11-------------------1---1-111114444351111177763322136361-21----1211111185-5222----211111111112---1-5---21--211211-------------2-------------------1---------113-212----11111111222211112111--1--1------22111213332333333-3333333433333333333333431123333333333333333133233332-2111-1111111-11------11111-213122122111111111--11-111222154444464554442545111111111-111111111122111111111111-------122111111111-11-1311111-111-111----1-1111111-1111-111-1- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------11--------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 163 STR:RPRED 58.6 SQ:SECSTR #########################################TTHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc#cccccHHHHHHHHHHHHHccHHHHHHHHHHHHcTTTTTcccccTcHHHHHHHHHHHHHHHHHHHHHHHHHHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHc######################################################################### DISOP:02AL 1-1,259-273,276-279| PSIPRED cccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHEEEEcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHccHHHHHHHHHHHHHHcc //