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Lactobacillus salivarius UCC118 (lsal0)
Gene : prfA
DDBJ      :prfA         Bacterial Peptide Chain Release Factor 1
Swiss-Prot:RF1_LACS1    RecName: Full=Peptide chain release factor 1;         Short=RF-1;

Homologs  Archaea  0/68 : Bacteria  911/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
e.38.1
:360 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->357 1zbtA PDBj 8e-86 59.0 %
:RPS:PDB   4->359 3d5aX PDBj 8e-98 43.1 %
:RPS:SCOP  5->346 1gqeA  e.38.1.1 * e-100 30.6 %
:HMM:SCOP  27->358 1rq0A_ e.38.1.1 * 5.6e-102 43.1 %
:RPS:PFM   66->180 PF03462 * PCRF 2e-18 44.3 %
:RPS:PFM   210->307 PF00472 * RF-1 4e-20 53.1 %
:HMM:PFM   210->322 PF00472 * RF-1 7.3e-44 48.7 113/114  
:HMM:PFM   68->180 PF03462 * PCRF 1.5e-38 51.3 113/116  
:BLT:SWISS 1->360 RF1_LACS1 0.0 100.0 %
:PROS 229->245|PS00745|RF_PROK_I
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99399.1 GT:GENE prfA GT:PRODUCT Bacterial Peptide Chain Release Factor 1 GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 633672..634754 GB:FROM 633672 GB:TO 634754 GB:DIRECTION + GB:GENE prfA GB:PRODUCT Bacterial Peptide Chain Release Factor 1 GB:NOTE COG0216 [J] Protein chain release factor A RF-1 GB:PROTEIN_ID ABD99399.1 GB:DB_XREF GI:90820760 GB:GENE:GENE prfA LENGTH 360 SQ:AASEQ MDKLFDRLQMLEDRYEELGELLSDPDVISDTKRFTKLSKEMADLRETVEKYNKYKEVTQQISDDEEMLSDGLDDEMASLVKEELSNAKNEKVKLEEEIKILLLPKDPNDDKNIIMEIRGAAGGDEASLFAADLFSMYSKYAERQGWSIEVIDKNVTEVGGFKEIALIINGNSVWSKLKYESGAHRVQRIPVTESAGRVHTSTATVVVMPEEEDVEIELDPKDIRVDVYRSSGAGGQHINKTSSAVRMTHLPTGIVVAMQDQRSQQQNREKAMKILKARVYDYYAQQEQSEYDANRKSAVGTGDRSERIRTYNYPQNRVTDHRIGLSLNKLDRIMNGELEDVIDALVLFEQTKAMEKLENE GT:EXON 1|1-360:0| SW:ID RF1_LACS1 SW:DE RecName: Full=Peptide chain release factor 1; Short=RF-1; SW:GN Name=prfA; OrderedLocusNames=LSL_0590; SW:KW Complete proteome; Cytoplasm; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->360|RF1_LACS1|0.0|100.0|360/360| GO:SWS:NREP 2 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| PROS 229->245|PS00745|RF_PROK_I|PDOC00607| COIL:NAA 28 COIL:NSEG 1 COIL:REGION 39->66| SEG 88->103|knekvkleeeikilll| BL:PDB:NREP 1 BL:PDB:REP 4->357|1zbtA|8e-86|59.0|305/311| RP:PDB:NREP 1 RP:PDB:REP 4->359|3d5aX|8e-98|43.1|353/354| RP:PFM:NREP 2 RP:PFM:REP 66->180|PF03462|2e-18|44.3|115/115|PCRF| RP:PFM:REP 210->307|PF00472|4e-20|53.1|98/107|RF-1| HM:PFM:NREP 2 HM:PFM:REP 210->322|PF00472|7.3e-44|48.7|113/114|RF-1| HM:PFM:REP 68->180|PF03462|1.5e-38|51.3|113/116|PCRF| GO:PFM:NREP 5 GO:PFM GO:0005737|"GO:cytoplasm"|PF03462|IPR005139| GO:PFM GO:0006415|"GO:translational termination"|PF03462|IPR005139| GO:PFM GO:0016149|"GO:translation release factor activity, codon specific"|PF03462|IPR005139| GO:PFM GO:0003747|"GO:translation release factor activity"|PF00472|IPR000352| GO:PFM GO:0006415|"GO:translational termination"|PF00472|IPR000352| RP:SCP:NREP 1 RP:SCP:REP 5->346|1gqeA|e-100|30.6|337/362|e.38.1.1| HM:SCP:REP 27->358|1rq0A_|5.6e-102|43.1|332/333|e.38.1.1|1/1|Release factor| OP:NHOMO 2257 OP:NHOMOORG 1101 OP:PATTERN -------------------------------------------------------------------- 2222222222222222222-2222222222222222222222222222222222222222232222222222222222222222222233322212222223222322221222222222112231122222222222222222222222222112222222222232222222222222222221222222221222222222222222222222222222222222222222222222221222222222212222222222222222222222222122222222222222222222222222222222222222222222223222222222222222222222222222222222222222222222222222222222222222222222222222222212212222222222222222222232222222222222222222222222222122222223322222212222222222222212222222222222222222212222222222222232222222222322222221122222222122222222222222222222222222222233333332322222222222222222222222222222222221222223222222222222222222122223122222212222222222122333323323-22233333332332323332223322332332232222333331323231222222222212222222212122222222211222222221222222222222222222232333212122221222222222222122212222222221222222222222222222222222222222212222221-111-1111111111111112222222222222 33--221-511-1112221122211112211212122212221223112221221121121222111112112121111112222112-21121211212112111-1612322234222124421231BJ2-32421222-222222222223223332111121-122311115254M33323456629B3342223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 356 STR:RPRED 98.9 SQ:SECSTR ###cHHHHHHHTHHHHHHHHHTTcTTTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcTTcccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHTcEEEEEEEEEcTTccEEEEEEEEEcTTHHHHHGGGccEEEEEEccccccccccEEEEEEEEEEEccccccccccGGGEEEEEEccccccHHHHHHcccEEEEEETTTTEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccGGGGccccEEEETTTTEEEETTTTEEEccHHHHTTTccHHHHHHHHHHHHHHHHHHHcc# DISOP:02AL 1-1,189-196,284-306,351-353,356-361| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccEEEHHEEEEEEEcccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEcccHHHHHHHccccEEEEEEcccccccccccEEEEEEEccccccccccccHHHEEEEEEEccccccccccccccEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccEEEEEcccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHcc //