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Lactobacillus salivarius UCC118 (lsal0)
Gene : prfB
DDBJ      :prfB         Bacterial Peptide Chain Release Factor 2
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  911/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
e.38.1
:355 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->346 1gqeA PDBj 6e-78 47.0 %
:RPS:PDB   8->352 2b3tB PDBj e-102 36.4 %
:RPS:SCOP  2->349 1gqeA  e.38.1.1 * e-118 44.2 %
:HMM:SCOP  1->349 1gqeA_ e.38.1.1 * 3.6e-111 44.1 %
:RPS:PFM   67->178 PF03462 * PCRF 2e-17 46.4 %
:RPS:PFM   213->298 PF00472 * RF-1 4e-17 50.0 %
:HMM:PFM   209->321 PF00472 * RF-1 2e-41 42.9 112/114  
:HMM:PFM   70->178 PF03462 * PCRF 8.3e-38 45.0 109/116  
:BLT:SWISS 3->355 RF2_LACPL e-150 72.4 %
:PROS 228->244|PS00745|RF_PROK_I

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99993.1 GT:GENE prfB GT:PRODUCT Bacterial Peptide Chain Release Factor 2 GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1222388..1223455) GB:FROM 1222388 GB:TO 1223455 GB:DIRECTION - GB:GENE prfB GB:PRODUCT Bacterial Peptide Chain Release Factor 2 GB:NOTE COG1186 [J] Protein chain release factor B RF-2 GB:PROTEIN_ID ABD99993.1 GB:DB_XREF GI:90821354 GB:GENE:GENE prfB LENGTH 355 SQ:AASEQ MNLGGLFDLDALEEKIAENEARMAEPGFWDDQEKAQEVIAENNDLKAKFETFHELAESISDLGVSLELLQEIPDDEELQADLEENYQHAEKLLQSYQLNMLLSEKYDKNNAILEIHPGAGGTESQDWGSMLLRMYTRWASQHDFKVETVDYQPGDDAGIKSVTLMIEGKNAYGYLRSERGVHRLVRISPFDSAGRRHTSFASVNVMPELDDSVEVELRPEDIKMEVFRASGAGGQHINKTSSAVRLIHIPTGIVVSSQAQRSQFQNRATAENMLRAKLYQLEMEEKEKQRAAIQGEQLDIGWGSQIRSYVFHPYSMVKDHRTDYETGNIQAVMDGDLDPFINAYLQWKLQQANPQ GT:EXON 1|1-355:0| BL:SWS:NREP 1 BL:SWS:REP 3->355|RF2_LACPL|e-150|72.4|352/357| PROS 228->244|PS00745|RF_PROK_I|PDOC00607| BL:PDB:NREP 1 BL:PDB:REP 3->346|1gqeA|6e-78|47.0|332/354| RP:PDB:NREP 1 RP:PDB:REP 8->352|2b3tB|e-102|36.4|297/300| RP:PFM:NREP 2 RP:PFM:REP 67->178|PF03462|2e-17|46.4|112/115|PCRF| RP:PFM:REP 213->298|PF00472|4e-17|50.0|86/107|RF-1| HM:PFM:NREP 2 HM:PFM:REP 209->321|PF00472|2e-41|42.9|112/114|RF-1| HM:PFM:REP 70->178|PF03462|8.3e-38|45.0|109/116|PCRF| GO:PFM:NREP 5 GO:PFM GO:0005737|"GO:cytoplasm"|PF03462|IPR005139| GO:PFM GO:0006415|"GO:translational termination"|PF03462|IPR005139| GO:PFM GO:0016149|"GO:translation release factor activity, codon specific"|PF03462|IPR005139| GO:PFM GO:0003747|"GO:translation release factor activity"|PF00472|IPR000352| GO:PFM GO:0006415|"GO:translational termination"|PF00472|IPR000352| RP:SCP:NREP 1 RP:SCP:REP 2->349|1gqeA|e-118|44.2|346/362|e.38.1.1| HM:SCP:REP 1->349|1gqeA_|3.6e-111|44.1|347/362|e.38.1.1|1/1|Release factor| OP:NHOMO 2257 OP:NHOMOORG 1101 OP:PATTERN -------------------------------------------------------------------- 2222222222222222222-2222222222222222222222222222222222222222222222222222222222222222222233322212222223222322221222222222112231122222222222222222322222222112222222222232222222222222222221222222221222222222222222222222222222222222222222222222221222222222212222222222222222222222222122222222222222222222222222222222222222222222223222222222222222222222222222222222222222222222222222222222222222222222222222222212212222222222222222222232222222222222222222222222222122222223322222212222222222222212222222222222222222212222222222222222222222222322222221122222222122222222222222222222222222222234333342322222222222222222222222222222222221222223222222222222222222122223122222212222222222122333323323-22233333332332323332223322332332232222333331323231222222222212222222212122222222211222222221222222222222222222122233212122221222222222222122212222222221222222222222222222222222222222212222221-111-1111111111111112222222232222 33--221-511-1112221122222112221212122212221222122221221121121222112112111111111112221111-23122221112111111-1622322233122114221231BJ2-32421222-222222222123222232111121-134311215254M33323456729C3342223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 351 STR:RPRED 98.9 SQ:SECSTR ##HHHHTccHHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHccccccccccccGGGccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHTTccccEEEEEEcTTccEEEEEEEEcccccHHHHGGGcEEEEEEEccTTccccccEEEEEEEEccccccTTTccccccccEEEEEcccccccTTTcccccEEEEEEETTTccEEEEEEcccHHHHHHHHHHHHHHHHTTTTTTccHHHHHHHHHHHcccccccEEEEEETTTTTEEEEGGGTEEEccHHHHHHTcTHHHHHHHHHHHHHHHc## DISOP:02AL 1-1,283-305,348-356| PSIPRED ccHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEcccHHHHHHccccEEEEEEEccccccccEEEEEEEEEEcccccccccccccHHHEEEEEEEccccccccccccccEEEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccEEEEcccccccHHHHHcccHHHHHHHHHHHHHHHHHcc //