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Lactobacillus salivarius UCC118 (lsal0)
Gene : rep.1
DDBJ      :rep          ATP-dependent DNA helicase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  148/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
b.69.7c.37.1
:755 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   205->282 1qhgA PDBj 7e-04 35.8 %
:BLT:PDB   585->748 3dmnA PDBj 1e-24 40.9 %
:RPS:PDB   585->747 3dmnA PDBj 6e-10 33.1 %
:RPS:SCOP  208->265 1w36B1  c.37.1.19 * 4e-06 27.6 %
:RPS:SCOP  518->747 1ve6A1  b.69.7.2 * 4e-09 5.2 %
:HMM:SCOP  199->752 1qhh.1 c.37.1.19 * 2.7e-42 25.2 %
:RPS:PFM   518->663 PF00580 * UvrD-helicase 7e-08 30.6 %
:HMM:PFM   211->251 PF00580 * UvrD-helicase 1.9e-05 35.0 40/533  
:HMM:PFM   326->627 PF00580 * UvrD-helicase 6.7e-09 22.8 145/533  
:HMM:PFM   10->74 PF03920 * TLE_N 0.001 25.0 64/135  
:BLT:SWISS 2->747 HELD_BACSU e-125 36.8 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99031.1 GT:GENE rep.1 GT:PRODUCT ATP-dependent DNA helicase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(268239..270506) GB:FROM 268239 GB:TO 270506 GB:DIRECTION - GB:GENE rep GB:PRODUCT ATP-dependent DNA helicase GB:NOTE COG0210 [L] Superfamily I DNA and RNA helicases GB:PROTEIN_ID ABD99031.1 GB:DB_XREF GI:90820392 GB:GENE:GENE rep LENGTH 755 SQ:AASEQ MDNEKALEQKRVDDVMNEIQKQLDATQIEYDKAHKETTSVERNYVQNARVNTYEVDDQMETNAEIQQQKNLVAKTIENETILKKQLSTLKILQDSAYFGRIDIHENGEEDSETLYIGTSSLVDENQDFLIYDWRAPISSIYYNGTLGPVSYETPMGEQFAELKKKRQFTIKKGVITNMFDTNETIGDEILQSVLGEHSDEYMRNIVATIQAEQNDIIRDVKHDLLLVQGVAGSGKTSAILQRIAFLLYHSRDKLNAEQIVLFSPNLLFSHYISEVLPSLGEKNMRQITLAKFLNNRFEGLQVESLFDKYEKKITSSKKTNSIESIKEDPQFMHTVEEYVQNVSSSQLRFTDIMLDSEIFFSHNEIHDIYSQLPQAMKPSQKFAETKNLLIKQLNRKIKENAQADWVRSEIENLSDEEYYDLLGTKRRHAFQAIDDEEFYIGRKIVKKRFAPVYDALYNNYFIDYYAQYSDFLANKLPEAVDLFNQNLEFHKIDLVDAAPLLYLRDLLTGSGRNQAIAHLFIDEMQDYTLPQLMYLKYIFPNAKLTLLGDSEQALFNEFRTPQELLDYFNKHLNVKKSRIIKLNKSYRSTQQITNFMKALLPDGNEIQAFTRQGKKPELIIASKENGLHALKLELKQRDLSSPVALITKNQAESDFLYQKLRKSFDSVTLLEDKDRSLPKGIVILPIYLAKGLEFDDVIAYDISHDNYSGINDTGILYTICSRAMHRLTLISCGKPSSLIMSIPSDLYTTKSTVTL GT:EXON 1|1-755:0| BL:SWS:NREP 1 BL:SWS:REP 2->747|HELD_BACSU|e-125|36.8|739/774| COIL:NAA 20 COIL:NSEG 1 COIL:REGION 17->36| SEG 310->327|ekkitsskktnsiesike| BL:PDB:NREP 2 BL:PDB:REP 205->282|1qhgA|7e-04|35.8|67/622| BL:PDB:REP 585->748|3dmnA|1e-24|40.9|154/159| RP:PDB:NREP 1 RP:PDB:REP 585->747|3dmnA|6e-10|33.1|154/159| RP:PFM:NREP 1 RP:PFM:REP 518->663|PF00580|7e-08|30.6|144/449|UvrD-helicase| HM:PFM:NREP 3 HM:PFM:REP 211->251|PF00580|1.9e-05|35.0|40/533|UvrD-helicase| HM:PFM:REP 326->627|PF00580|6.7e-09|22.8|145/533|UvrD-helicase| HM:PFM:REP 10->74|PF03920|0.001|25.0|64/135|TLE_N| GO:PFM:NREP 4 GO:PFM GO:0003677|"GO:DNA binding"|PF00580|IPR000212| GO:PFM GO:0004003|"GO:ATP-dependent DNA helicase activity"|PF00580|IPR000212| GO:PFM GO:0005524|"GO:ATP binding"|PF00580|IPR000212| GO:PFM GO:0006281|"GO:DNA repair"|PF00580|IPR000212| RP:SCP:NREP 2 RP:SCP:REP 208->265|1w36B1|4e-06|27.6|58/469|c.37.1.19| RP:SCP:REP 518->747|1ve6A1|4e-09|5.2|229/313|b.69.7.2| HM:SCP:REP 199->752|1qhh.1|2.7e-42|25.2|404/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 255 OP:NHOMOORG 150 OP:PATTERN -------------------------------------------------------------------- ---121111111111------1---1------11112222-42424121111111112--3321423444-11111111111--------11----------------------------------------------------1--------------------------------------1-----1-2-12222213212222222-11-1222-1-21--------22--------------------12212212111222222422111------------------------------------------------112333323222222122222211-----1--521----1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 326 STR:RPRED 43.2 SQ:SECSTR ############################################################################################################################################################################################################HHTTccHHHHHHHHcccccEEEEEc#TTccHHHHHHHHHHHHH########HTTcc##cccEEEEEccHHHHHHHHHH###############################################################################################################################################################################################################ccEEEHHHHTTEETTEEcccccccccccEEEEccGGGccHHHHHHHTTccTTcEEEEEEcTTcccccccccHHHccEEEcccccHHHHTcHHHHHcccccHHHHHHHHTTcccccccccEEEEEccHHHHHHHHHHcccHHHHHHHHHHTTccEEEEEccHHHHHHHHHHHHTTTccEEEccccccccEccEEEEEGGGcTTccEEEEEEETccTTTcccGGGHHHHHHHHTTEEEEEEEEEcEcccGGGTTccGGGcE####### DISOP:02AL 1-2,310-324| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccEEEEEEEEEccccccEEEEEcccHHHHHHcccccccccccccccEEEEEEEEEEEEEEEccEEEEEEcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHHHcccccEEEcHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHccccccccccccccccEEEEEccHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHcccccEEEEEEccccccccccEEcHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHHHHcEEEEEEEccccHHHHcccHHHEEEEEEEEc //