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Lactobacillus salivarius UCC118 (lsal0)
Gene : rep.2
DDBJ      :rep          ATP-dependent DNA helicase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  162/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:763 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   203->247 1qhhA PDBj 9e-05 40.9 %
:BLT:PDB   522->617 1uaaB PDBj 2e-06 36.7 %
:BLT:PDB   596->762 3dmnA PDBj 1e-49 66.7 %
:RPS:PDB   24->206 1cg2A PDBj 7e-04 13.8 %
:RPS:PDB   596->761 3dmnA PDBj 2e-12 56.1 %
:RPS:SCOP  208->627 1w36B1  c.37.1.19 * 2e-14 10.6 %
:RPS:SCOP  615->747 1pjrA2  c.37.1.19 * 4e-06 15.3 %
:HMM:SCOP  208->641 1w36B1 c.37.1.19 * 1.4e-45 25.4 %
:HMM:SCOP  542->763 1w36D2 c.37.1.19 * 3.6e-18 23.6 %
:RPS:PFM   529->677 PF00580 * UvrD-helicase 1e-08 35.3 %
:HMM:PFM   210->248 PF00580 * UvrD-helicase 1.2e-06 34.2 38/533  
:HMM:PFM   527->621 PF00580 * UvrD-helicase 1.6e-11 25.5 94/533  
:HMM:PFM   593->690 PF00771 * FHIPEP 0.00054 19.4 98/658  
:BLT:SWISS 9->762 HELD_BACSU e-132 36.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00182.1 GT:GENE rep.2 GT:PRODUCT ATP-dependent DNA helicase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1447108..1449399) GB:FROM 1447108 GB:TO 1449399 GB:DIRECTION - GB:GENE rep GB:PRODUCT ATP-dependent DNA helicase GB:NOTE COG0210 [L] Superfamily I DNA and RNA helicases GB:PROTEIN_ID ABE00182.1 GB:DB_XREF GI:90821543 GB:GENE:GENE rep LENGTH 763 SQ:AASEQ MALTEKELEQKHMDDVVAKIKQAEKRHQSEINKVEQDRKDIMDDFKNNVRIKTGSYAGIMETGLTVRQQQQLLQERENSWQHATQRLEVLEKLEKKPYFARIDFTENDGKQESIYIGLGSFADTPDHFMIYDWRAPISSIYYDGKLGEVTYDTPDGPQTAVLTLKRQFMVEDGKIITLFDTDETVGDQMLLEVLDESSDIKMKSIVTTIQKEQNKIIRDTKSDLLFVQGAAGSGKTSAVLQRVAYLLYRYRGNLSSSQVVLFSPNQLFNDYIDQVLPELGEQNMVQMTYYQYSQRRLPKIHVETLQERFDEDNQPLRRKISALKSSLTMFNATTNYSDYLNTAGMRFRDIKYNGEIFFSKKDIKKIYYSFNSNYNLRNRLSATKEKLIKILNSKVGELAKQDSIQKQIQDLSREELNELYGDEPRNFVNGDQELKFLARSYVMKQLRPVQRAIVRNRFLSINKQFVHFMRNIPELVDLAKFDLTLEQWNDDVDMTISRLKNHKLTIADVTIYLYLYDLITGKRGEVDIKHIFIDEIQDYTAYQLAYLKFGFPRAKFTMLGDLNQAIFTKENSHTLLDELGTMFDKDKTKVIQLTQSYRSTQQITDFTKEVLVNGEKVTSFARKGPLPTITIDSDEEKLVNDVVMQLHRNDAEKMTTAIIGKTLAECEKLTEELKQKGAQVTLIKTENQRLVPGIIVVPAFLAKGLEFDAVIMWNANRNNYHDESERQLVYTICSRAMYRLDIFAVKELTPLMDRVNPELYEML GT:EXON 1|1-763:0| BL:SWS:NREP 1 BL:SWS:REP 9->762|HELD_BACSU|e-132|36.5|742/774| SEG 67->77|rqqqqllqere| BL:PDB:NREP 3 BL:PDB:REP 203->247|1qhhA|9e-05|40.9|44/164| BL:PDB:REP 522->617|1uaaB|2e-06|36.7|90/633| BL:PDB:REP 596->762|3dmnA|1e-49|66.7|156/159| RP:PDB:NREP 2 RP:PDB:REP 24->206|1cg2A|7e-04|13.8|159/389| RP:PDB:REP 596->761|3dmnA|2e-12|56.1|155/159| RP:PFM:NREP 1 RP:PFM:REP 529->677|PF00580|1e-08|35.3|139/449|UvrD-helicase| HM:PFM:NREP 3 HM:PFM:REP 210->248|PF00580|1.2e-06|34.2|38/533|UvrD-helicase| HM:PFM:REP 527->621|PF00580|1.6e-11|25.5|94/533|UvrD-helicase| HM:PFM:REP 593->690|PF00771|0.00054|19.4|98/658|FHIPEP| GO:PFM:NREP 4 GO:PFM GO:0003677|"GO:DNA binding"|PF00580|IPR000212| GO:PFM GO:0004003|"GO:ATP-dependent DNA helicase activity"|PF00580|IPR000212| GO:PFM GO:0005524|"GO:ATP binding"|PF00580|IPR000212| GO:PFM GO:0006281|"GO:DNA repair"|PF00580|IPR000212| RP:SCP:NREP 2 RP:SCP:REP 208->627|1w36B1|2e-14|10.6|416/469|c.37.1.19| RP:SCP:REP 615->747|1pjrA2|4e-06|15.3|131/308|c.37.1.19| HM:SCP:REP 208->641|1w36B1|1.4e-45|25.4|346/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 542->763|1w36D2|3.6e-18|23.6|216/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 269 OP:NHOMOORG 163 OP:PATTERN -------------------------------------------------------------------- ---131111111111------1---1------11112222-42424121111111112--3321423444-11111111111--------11----------------------------------------------------1--------------------------------------1-------2-12222213212222222-11-1222---21--------22--------------------12212212111222222422111------------------------------------------------112333323222222122222211---1-1--52-----1----------------------------------------------------------------------------------------------------------------------------------------------11-1--111111--111111--------------------------------------------------------------1----1----------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 463 STR:RPRED 60.7 SQ:SECSTR #######################ccccHHHHHHHHHHHHHHHHHHHHHHTccccTTcH####################HHHHHHHHH#HHHHHHHTTcEEEEEEccTTcccEEEEEEEEc##cccccEEEEHHHHcccEEE#TTEEEcTTTTTTHHHHHHHHHHHHTTcccccEEEEEEEccGGGTTTTTHHHHHHHHHHccEEEETTccHHHHHHHHcccccccccccT#TccHHHHHHHHHHHHH###########################################################################################################################################################################################################################################################HHTTEEcHHHHHTTEETTEEcccccccccccEEEEccGGGccHHHHHHHTTccTTcEEEEEEcTTccccccccccHHHHHHHHccEEEccccccccTcccccHHHHHHHHTTHHHHHTTTccccccccccEEEEEccHHHHHHHHHHHHHHHHTTccEEEEEccHHHHHHHHHHHHTTTccEEEcccccccccccEEEEEGGGcTTccEEEEEEETccTTTcccGGGHHHHHHHHTTEEEEEEEEEcccHcGGGTTccGGGcEE# DISOP:02AL 1-3,72-76| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEEEEEccccccEEEEEcccHHHHHHcccccccccccccccEEEEEEEEEEEEEEEccEEEEEEccccHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHccccccccccEEEEcccHHHHHHHHHHHHHcccccEEEEEHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccEEEccEEEEcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccEEEEcccccccHHHHHHHHHHcccccEEEEEccccccccccccHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHccccccccccccccEEEEEEccHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHHHHcEEEEEEcccccHHHHHccHHHHccc //