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Lactobacillus salivarius UCC118 (lsal0)
Gene : rho
DDBJ      :rho          Transcription termination factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  781/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.140.3a.140.4a.35.1b.40.4c.37.1
:427 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   12->392 1pvoE PDBj e-110 54.6 %
:RPS:PDB   49->427 2ck3F PDBj 1e-67 22.0 %
:RPS:SCOP  11->58 1e7dA1  a.140.4.1 * 7e-05 17.0 %
:RPS:SCOP  60->135 1a62A2  b.40.4.5 * 2e-18 51.4 %
:RPS:SCOP  112->373 1bmfD3  c.37.1.11 * 5e-55 24.4 %
:RPS:SCOP  351->410 1x2lA1  a.35.1.7 * 1e-07 20.0 %
:HMM:SCOP  12->58 1a62A1 a.140.3.1 * 9.2e-09 38.3 %
:HMM:SCOP  58->135 1a62A2 b.40.4.5 * 6.8e-27 57.9 %
:HMM:SCOP  99->379 1e79A3 c.37.1.11 * 1.2e-67 36.2 %
:RPS:PFM   17->56 PF07498 * Rho_N 7e-04 45.0 %
:RPS:PFM   63->136 PF07497 * Rho_RNA_bind 8e-25 66.7 %
:RPS:PFM   167->366 PF00006 * ATP-synt_ab 2e-06 27.2 %
:HMM:PFM   166->371 PF00006 * ATP-synt_ab 3.7e-40 24.4 201/215  
:HMM:PFM   60->136 PF07497 * Rho_RNA_bind 1e-32 50.7 75/78  
:HMM:PFM   16->58 PF07498 * Rho_N 1.7e-13 41.9 43/43  
:BLT:SWISS 9->418 RHO_BACSU e-165 68.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99159.1 GT:GENE rho GT:PRODUCT Transcription termination factor GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 376785..378068 GB:FROM 376785 GB:TO 378068 GB:DIRECTION + GB:GENE rho GB:PRODUCT Transcription termination factor GB:NOTE COG0781 [K] Transcription termination factor GB:PROTEIN_ID ABD99159.1 GB:DB_XREF GI:90820520 GB:GENE:GENE rho LENGTH 427 SQ:AASEQ MATSENKDIKELTIAELENMTLKEIYNYARIYKIPYYSKMNKKELSLAVIRAQANKNGFYMKGILEIVPNQDGYGFLRPINYGPSQEDIYISASQIRRFGLRNGDEVAGTARPPRQGEKFYGILHVDSVNNKDPEEAKKRDHFPALTPIYPDKQIELETIKGQLSTRVIDLFAPIGFGQRGLIVAPPKAGKTSLLKAIAKGISANYPDAKLLLLLIDERPEEVTDLERTVNGEVVYSTFDQRPENHVRVAELLLERAMRLVEDKQDVIILLDSLTRLARAYNLVVPPSGRTLSGGIDPAALYKPKKFFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNQELHLSRELAERRVFPAVDIKRSGTRKEELLLSQEKLDALWKLRKNLSNDLVSDTEQVLQLLRNSQDNAEFCGKIEKMMK GT:EXON 1|1-427:0| BL:SWS:NREP 1 BL:SWS:REP 9->418|RHO_BACSU|e-165|68.9|408/427| BL:PDB:NREP 1 BL:PDB:REP 12->392|1pvoE|e-110|54.6|372/407| RP:PDB:NREP 1 RP:PDB:REP 49->427|2ck3F|1e-67|22.0|372/466| RP:PFM:NREP 3 RP:PFM:REP 17->56|PF07498|7e-04|45.0|40/42|Rho_N| RP:PFM:REP 63->136|PF07497|8e-25|66.7|72/75|Rho_RNA_bind| RP:PFM:REP 167->366|PF00006|2e-06|27.2|195/212|ATP-synt_ab| HM:PFM:NREP 3 HM:PFM:REP 166->371|PF00006|3.7e-40|24.4|201/215|ATP-synt_ab| HM:PFM:REP 60->136|PF07497|1e-32|50.7|75/78|Rho_RNA_bind| HM:PFM:REP 16->58|PF07498|1.7e-13|41.9|43/43|Rho_N| GO:PFM:NREP 6 GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07498|IPR011112| GO:PFM GO:0006353|"GO:transcription termination"|PF07498|IPR011112| GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07497|IPR011113| GO:PFM GO:0003723|"GO:RNA binding"|PF07497|IPR011113| GO:PFM GO:0006353|"GO:transcription termination"|PF07497|IPR011113| GO:PFM GO:0005524|"GO:ATP binding"|PF00006|IPR000194| RP:SCP:NREP 4 RP:SCP:REP 11->58|1e7dA1|7e-05|17.0|47/54|a.140.4.1| RP:SCP:REP 60->135|1a62A2|2e-18|51.4|74/78|b.40.4.5| RP:SCP:REP 112->373|1bmfD3|5e-55|24.4|258/276|c.37.1.11| RP:SCP:REP 351->410|1x2lA1|1e-07|20.0|60/87|a.35.1.7| HM:SCP:REP 12->58|1a62A1|9.2e-09|38.3|47/0|a.140.3.1|1/1|Rho termination factor, N-terminal domain| HM:SCP:REP 58->135|1a62A2|6.8e-27|57.9|76/78|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 99->379|1e79A3|1.2e-67|36.2|268/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1461 OP:NHOMOORG 784 OP:PATTERN -------------------------------------------------------------------- 1222211111111111111-111111111111111111112111211121121211111111212112221111111111111223221111111111111111111131222222222222222111111111112221111-12-------------------------------------11111111222222222222222222212212222222222222222222111111111111111111111----------11-----11--------------------------------------------------22222222222222222222111222111211111222222222222211323211121111224222222322322222222122-23232122332232223342222211222222222222211111111111212312222222211111111111111111111111122113331433354344423332555625233322211223223111112322223111321111111222122223122222223333222222232332331212222122222222222222222221112412222222224232423222322333321-1222112111132133242442222222-43223322224241221121113343344444444444444442122322352455555445454113111111222211523111111111111111111-1111112233232222322222333111111111121132222245222222222222211-111221111112222222222---------------------1----2122222222132 --------------------------------------------------------------------------------------------------------------------------------------------------------------2--------------------------1--------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-11,287-293| PSIPRED ccccccccEEEEcHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccEEEEEEEEEEccccccEEEEEEccccccccEEcccHHcccccccccEEEEEccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEcccccccccHHHHHHHHccEEEEEEHHHHHccccccccccccHHcccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHc //