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Lactobacillus salivarius UCC118 (lsal0)
Gene : rluD.1
DDBJ      :rluD         Ribosomal large subunit pseudouridine synthase D
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  903/915 : Eukaryota  168/199 : Viruses  0/175   --->[See Alignment]
d.265.1d.66.1
:298 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   13->293 2istA PDBj 7e-51 44.6 %
:RPS:PDB   13->292 3dh3B PDBj 4e-37 20.3 %
:RPS:SCOP  13->98 1dm9A  d.66.1.3 * 3e-13 17.4 %
:RPS:SCOP  90->293 1v9kA  d.265.1.3 * 3e-60 38.9 %
:HMM:SCOP  13->120 1c06A_ d.66.1.2 * 7.1e-21 33.6 %
:HMM:SCOP  68->296 1przA_ d.265.1.3 * 4.2e-78 48.2 %
:RPS:PFM   90->236 PF00849 * PseudoU_synth_2 1e-30 49.3 %
:HMM:PFM   85->237 PF00849 * PseudoU_synth_2 5.5e-41 35.8 151/164  
:HMM:PFM   13->58 PF01479 * S4 1.2e-13 41.3 46/48  
:BLT:SWISS 10->297 YLYB_BACSU 4e-95 58.3 %
:PROS 130->144|PS01129|PSI_RLU
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99636.1 GT:GENE rluD.1 GT:PRODUCT Ribosomal large subunit pseudouridine synthase D GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 842817..843713 GB:FROM 842817 GB:TO 843713 GB:DIRECTION + GB:GENE rluD GB:PRODUCT Ribosomal large subunit pseudouridine synthase D GB:NOTE COG0564 [J] Pseudouridylate synthases, 23S RNA-specific GB:PROTEIN_ID ABD99636.1 GB:DB_XREF GI:90820997 GB:GENE:GENE rluD LENGTH 298 SQ:AASEQ MSDYKVLADKTGRLDKVVTNIFTDYTRSQLKKMIDDGNIKVNGDVKKANYKVNLGDEITFDKPEVKKLSLEPENIPLDIVYEDDDVIVVNKPQGMVVHPSPGHFEHTLVNALLYHSPLSTINGTYRPGIVHRIDKDTSGLLMVAKNDMAHQSLAKQLKDKTNTREYVALVHGNIKEDSGTIDAPLGRSKVDRKKQAVVKDGRNAVTHFEVLKRYGDYTLVKCVLETGRTHQIRVHMKYIGHPLVGDQLYGPRKTLGNSGQFLHAEKLGFVHPRTNEYLEFTAPLPENFKKLLESLDKR GT:EXON 1|1-298:0| BL:SWS:NREP 1 BL:SWS:REP 10->297|YLYB_BACSU|4e-95|58.3|288/303| PROS 130->144|PS01129|PSI_RLU|PDOC00869| SEG 78->89|divyedddvivv| BL:PDB:NREP 1 BL:PDB:REP 13->293|2istA|7e-51|44.6|276/321| RP:PDB:NREP 1 RP:PDB:REP 13->292|3dh3B|4e-37|20.3|236/241| RP:PFM:NREP 1 RP:PFM:REP 90->236|PF00849|1e-30|49.3|140/149|PseudoU_synth_2| HM:PFM:NREP 2 HM:PFM:REP 85->237|PF00849|5.5e-41|35.8|151/164|PseudoU_synth_2| HM:PFM:REP 13->58|PF01479|1.2e-13|41.3|46/48|S4| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145| GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145| GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145| RP:SCP:NREP 2 RP:SCP:REP 13->98|1dm9A|3e-13|17.4|86/104|d.66.1.3| RP:SCP:REP 90->293|1v9kA|3e-60|38.9|198/227|d.265.1.3| HM:SCP:REP 13->120|1c06A_|7.1e-21|33.6|107/159|d.66.1.2|1/1|Alpha-L RNA-binding motif| HM:SCP:REP 68->296|1przA_|4.2e-78|48.2|226/252|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 2964 OP:NHOMOORG 1076 OP:PATTERN --------------------------------------11111------------------------- 2121111222221211111-11111111111111112211111111221111111211111111211121111111112111111222444414-311122223234424-2222222-211114111111111112222211131223233311222222213212222113111113111133311221433-3333333333333322333333333333223333334533333333333333333333-34344343334444444443333333333333333333333333333333333333333334333333332333333333333343333333334332342133141121213323133214333322222333223333333322222222223-3233333322322332222222223344333333333333333333333333342222222223311222222222222221222333332222222232222222222222222222222222322243424334433333322244344444422225471324372234221233334433476779724333233333333333333334333322665444647735888879966689-A888A2-3232322222244444554444444444-44444444444444444444444444544444444444444445444444431544444444444222422222222233625454455454554444444344434436333333333-33333332222222225777566666667664533333333222222443322222223222242211112-22111222222122211122222222222242 ----341-21112231111-11-1-1-111111---1------11111-11111111--1-122222211332222322322222211-2321232111112131-12926222223-111121231214A3-31211112222112-12221322122--2333314222-1112334HA78-36347164A852236 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 298 STR:RPRED 100.0 SQ:SECSTR cTTTTTTHHHHHEHHHHHHTTTccccHHHHHHHHHTTcEEETTEEccTTcEEcccccEEETTEEEccccGGGccEEEEEEEEEcccEEEEEcTTcccccccccTTcHHHHHTcccTEEHHHTTccccEEccccccccEEEEEEEccTHHHHHHHcGGGcccHHEEEEEEEcccccHHHHHHHHTccccccHHHHTcccccccccccEEEcEEEEccccEEEEEEccccTTHHHHHHHHTTccEEEEEEEEETEcTEETTEEcTTccTTcEEEccHHHHHHHHHTccccccccTTccEE PSIPRED ccEEEEEcccccHHHHHHHHHcccccHHHHHHHHHcccEEEccEEEccccccccccEEEEEEcccccccccccccEEEEEEEcccEEEEEccccEEEEcccccccccHHHHHHHHHHHHHccccccEEEEEcccccccEEEEEEccHHHHHHHHHHHHHccccEEEEEEEEcEEccccEEEEccccccccccEEEEEcccccccccEEEEEEEcccEEEEEEEEcccccHHHHHHHHHcccccccccccccHHHccccccEEEEEEEEEEccccccEEEEEccccHHHHHHHHHHccc //