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Lactobacillus salivarius UCC118 (lsal0)
Gene : rluD.3
DDBJ      :rluD         Ribosomal large subunit pseudouridine synthase D
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  903/915 : Eukaryota  182/199 : Viruses  0/175   --->[See Alignment]
d.265.1d.66.1
:304 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   86->300 1v9fA PDBj 2e-22 33.8 %
:RPS:PDB   9->119 1c05A PDBj 2e-05 13.3 %
:RPS:PDB   93->292 2ab4A PDBj 2e-25 14.2 %
:RPS:SCOP  20->111 1dm9A  d.66.1.3 * 9e-05 13.8 %
:RPS:SCOP  88->303 1v9kA  d.265.1.3 * 4e-51 29.9 %
:HMM:SCOP  77->300 1przA_ d.265.1.3 * 8.8e-60 35.6 %
:RPS:PFM   95->244 PF00849 * PseudoU_synth_2 6e-21 39.7 %
:HMM:PFM   94->244 PF00849 * PseudoU_synth_2 7.1e-34 31.8 151/164  
:BLT:SWISS 7->294 YHCT_BACSU 3e-37 34.4 %
:PROS 135->149|PS01129|PSI_RLU

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00261.1 GT:GENE rluD.3 GT:PRODUCT Ribosomal large subunit pseudouridine synthase D GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1517675..1518589) GB:FROM 1517675 GB:TO 1518589 GB:DIRECTION - GB:GENE rluD GB:PRODUCT Ribosomal large subunit pseudouridine synthase D GB:NOTE COG0564 [J] Pseudouridylate synthases, 23S RNA-specific GB:PROTEIN_ID ABE00261.1 GB:DB_XREF GI:90821622 GB:GENE:GENE rluD LENGTH 304 SQ:AASEQ MSKYKFERTVNAEFSGISLRALLSEKWLLPRKFIHFLRIRENVKIDGKYYPMNTIVQGNQKIELIFEGDEFRTATSNYIVDKGRKIPIIFENDDLLVVNKPQGIKSHPNQPYETGTLVNYIAGYLDARDEHPYMVHRLDMLTSGAMIVAKNPVVVPILTRLISTHTIKRDYLAITEGIFDQKEGVIDLPIGKDENDKRKRKVDGIGALPARTRYQVIKEFENNSVVYLRLETGRTHQLRVHLSAMGHPIVGDVLYNHVSEEKHMMLHGYKQKLTLPFSMRELELKADIPEYFANYEEKIRENKN GT:EXON 1|1-304:0| BL:SWS:NREP 1 BL:SWS:REP 7->294|YHCT_BACSU|3e-37|34.4|282/302| PROS 135->149|PS01129|PSI_RLU|PDOC00869| BL:PDB:NREP 1 BL:PDB:REP 86->300|1v9fA|2e-22|33.8|210/250| RP:PDB:NREP 2 RP:PDB:REP 9->119|1c05A|2e-05|13.3|105/159| RP:PDB:REP 93->292|2ab4A|2e-25|14.2|183/300| RP:PFM:NREP 1 RP:PFM:REP 95->244|PF00849|6e-21|39.7|146/149|PseudoU_synth_2| HM:PFM:NREP 1 HM:PFM:REP 94->244|PF00849|7.1e-34|31.8|151/164|PseudoU_synth_2| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145| GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145| GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145| RP:SCP:NREP 2 RP:SCP:REP 20->111|1dm9A|9e-05|13.8|87/104|d.66.1.3| RP:SCP:REP 88->303|1v9kA|4e-51|29.9|214/227|d.265.1.3| HM:SCP:REP 77->300|1przA_|8.8e-60|35.6|222/252|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 2999 OP:NHOMOORG 1090 OP:PATTERN --------------------------------------11111------------------------- 2121132233331222223-42111222222122223222111111221111212111111111211111112221112111111222444414-211121223233424-2222222-211114111111111112222211121123233311223212313112222113111113111123311221433-3333333333333322333333333333223333334633333333333333333333-34344343334444444443333333333333333333333333333333333333333333333333332333333333333343333333334332342133141121212223133214333322222333222332322222222222223-3233333322322332222222223344333333333333333333333333342222222222211222222222222221222333332222222232222222222222222222222222222243423334432333322245343343322225481424272234221243434443465669724333233333333333333333233322665544647756899989A76798-989892-3233322122244444554444444444-44444444444444444444444444544444444444444445444444431544444444444222422222222233635555455454554445444344534436333333434-33333332222222226777566666667663323333334222222444422222223222232211112-22112221112122212222222222222242 -1--122-2--122311111111111111111--1--111111111111111111111111121222211342222322321112111-22211221-1112131212826343233-222131331214B3-32312114233213112332333132-11333314224-1221324E977-332351438661224 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 295 STR:RPRED 97.0 SQ:SECSTR #####cccHHHHHHccEEHHHHHHTTTcccHHHHHHHHHTTcEEETTEEccTTcEEcTTccETccEEccccEEEcGGGEETTEEEccccGGGcEEEEEEEcccccHHHccccTTcHHHHHHHHHTGGTcccEEEcccccTTcEEEEEEEEGGGGHHHHGGGGGGTTccEEEEEEEEETEEETTccTTcTcEEEEEccccccccccccccHHEEEEEEEEEEETTEEEEEEEEcTTccHHHHHHHHHHHHTccEEEEEEEEEEEEEETTEETTTcccTTTccHHHHHHHcEEGcHHHHHHE#### DISOP:02AL 1-1,303-305| PSIPRED ccccEEEEEEccccccccHHHHHHHcccccHHHHHHHHHcccEEEccEEEccccEEccccEEEEcccccccccccccccccccccccEEEEcccEEEEEccccEEEEcccccccccHHHHHHHHccccccEEEEEEcccccccEEEEEEccHHHHHHHHHHHHHcccEEEEEEEEEEEEccccEEEEccccccccccEEEEEcccccccccEEEEEEEEcccEEEEEEEEcccccHHHHHHHHHccccEEcccccccccccccHHcccEEEEccccccccEEEEEccccHHHHHHHHHHHHccc //