[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Lactobacillus salivarius UCC118 (lsal0)
Gene : rplB
DDBJ      :rplB         LSU ribosomal protein L2P
Swiss-Prot:RL2_LACS1    RecName: Full=50S ribosomal protein L2;

Homologs  Archaea  68/68 : Bacteria  909/915 : Eukaryota  194/199 : Viruses  0/175   --->[See Alignment]
b.34.5b.40.4
:277 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->275 2i2tC PDBj 2e-78 53.3 %
:RPS:PDB   6->272 3bboE PDBj 3e-83 48.1 %
:RPS:SCOP  5->125 2hgjD2  b.40.4.5 * 4e-28 59.5 %
:RPS:SCOP  127->196 1rl2A1  b.34.5.3 * 5e-31 78.6 %
:HMM:SCOP  38->126 1ffkA2 b.40.4.5 * 2.3e-33 68.5 %
:HMM:SCOP  127->269 1ffkA1 b.34.5.3 * 2.6e-57 61.3 %
:RPS:PFM   42->116 PF00181 * Ribosomal_L2 2e-15 58.7 %
:RPS:PFM   124->252 PF03947 * Ribosomal_L2_C 9e-43 69.5 %
:HMM:PFM   124->252 PF03947 * Ribosomal_L2_C 9.6e-60 67.4 129/130  
:HMM:PFM   42->118 PF00181 * Ribosomal_L2 4.5e-38 72.7 77/77  
:BLT:SWISS 1->277 RL2_LACS1 e-152 100.0 %
:PROS 218->229|PS00467|RIBOSOMAL_L2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00236.1 GT:GENE rplB GT:PRODUCT LSU ribosomal protein L2P GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1493766..1494599) GB:FROM 1493766 GB:TO 1494599 GB:DIRECTION - GB:GENE rplB GB:PRODUCT LSU ribosomal protein L2P GB:NOTE COG0090 [J] Ribosomal protein L2 GB:PROTEIN_ID ABE00236.1 GB:DB_XREF GI:90821597 GB:GENE:GENE rplB LENGTH 277 SQ:AASEQ MGIKKFKPTTNGRRNMTGSDFAEITKTKPEKSLLVSKSKTAGRNAYGRITVRHRGGGHKRKYRLIDFKRVKDNVPATVKAIEYDPNRSANIALLVYADGVKSYILAPKGLKVGQVVESGKDVDIKVGNTLPLANIPVGTVIHNIELKPGKGGQLVRSAGTSAQLLGKEGKYAIIRLTSGEVRMILVTCRATIGAVGNEQHELIKVGKAGRARWAGKRPQSRGSVMNPNDHPHGGGEGKAPVGRPSPMSPWGKKTTGLKTRSKKARSNKFIVRSRNKK GT:EXON 1|1-277:0| SW:ID RL2_LACS1 SW:DE RecName: Full=50S ribosomal protein L2; SW:GN Name=rplB; OrderedLocusNames=LSL_1432; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->277|RL2_LACS1|e-152|100.0|277/277| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 218->229|PS00467|RIBOSOMAL_L2|PDOC00384| SEG 52->61|rhrggghkrk| BL:PDB:NREP 1 BL:PDB:REP 3->275|2i2tC|2e-78|53.3|270/271| RP:PDB:NREP 1 RP:PDB:REP 6->272|3bboE|3e-83|48.1|262/266| RP:PFM:NREP 2 RP:PFM:REP 42->116|PF00181|2e-15|58.7|75/77|Ribosomal_L2| RP:PFM:REP 124->252|PF03947|9e-43|69.5|128/129|Ribosomal_L2_C| HM:PFM:NREP 2 HM:PFM:REP 124->252|PF03947|9.6e-60|67.4|129/130|Ribosomal_L2_C| HM:PFM:REP 42->118|PF00181|4.5e-38|72.7|77/77|Ribosomal_L2| GO:PFM:NREP 8 GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00181|IPR002171| GO:PFM GO:0005622|"GO:intracellular"|PF00181|IPR002171| GO:PFM GO:0005840|"GO:ribosome"|PF00181|IPR002171| GO:PFM GO:0006412|"GO:translation"|PF00181|IPR002171| GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF03947|IPR002171| GO:PFM GO:0005622|"GO:intracellular"|PF03947|IPR002171| GO:PFM GO:0005840|"GO:ribosome"|PF03947|IPR002171| GO:PFM GO:0006412|"GO:translation"|PF03947|IPR002171| RP:SCP:NREP 2 RP:SCP:REP 5->125|2hgjD2|4e-28|59.5|121/122|b.40.4.5| RP:SCP:REP 127->196|1rl2A1|5e-31|78.6|70/70|b.34.5.3| HM:SCP:REP 38->126|1ffkA2|2.3e-33|68.5|89/90|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 127->269|1ffkA1|2.6e-57|61.3|142/0|b.34.5.3|1/1|Translation proteins SH3-like domain| OP:NHOMO 1458 OP:NHOMOORG 1171 OP:PATTERN 11111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 23111111A4212222212122222122222222222412222222222222222221222221322212211331311122221134-23222222222221545113142322232121222342525E3-23512-222233-221-22132243135222231322312233222Q22222646F2531111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 274 STR:RPRED 98.9 SQ:SECSTR ##cccccccccccccccccccTcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEGGGccccccccccccccccccccccTTTccccccccccTTccccccTTcccccccccEEccccccccHHHHccccccccccTTTcccccccccccTTTcccccccccccTTcccccccccccccccccccccccccccccccccc# DISOP:02AL 1-1,37-45,234-247,275-278| PSIPRED cccEEcccccccccEEEEEcccccccccccccEEEEcccccccccccEEEEEEcccccccEEEEEEEEEEccccEEEEEEEEEccccccEEEEEEEccccEEEEEEccccccccEEEEccccccccccEEEHHHcccccEEEEEEEcccccEEEEEEcccEEEEEEEcccEEEEEcccccEEEEccccEEEEEEEccccccccEEHHHHHHHHccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEcccc //