[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Lactobacillus salivarius UCC118 (lsal0)
Gene : rplM
DDBJ      :rplM         LSU ribosomal protein L13P
Swiss-Prot:RL13_LACS1   RecName: Full=50S ribosomal protein L13;

Homologs  Archaea  0/68 : Bacteria  908/915 : Eukaryota  167/199 : Viruses  0/175   --->[See Alignment]
c.21.1
:147 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->143 2i2tJ PDBj 2e-45 57.1 %
:RPS:PDB   7->141 3d5bN PDBj 1e-44 48.1 %
:RPS:SCOP  4->141 1vs6J1  c.21.1.1 * 1e-57 56.5 %
:HMM:SCOP  16->143 1j3aA_ c.21.1.1 * 5.1e-45 55.2 %
:RPS:PFM   16->141 PF00572 * Ribosomal_L13 1e-34 60.3 %
:HMM:PFM   16->142 PF00572 * Ribosomal_L13 2.2e-55 57.5 127/128  
:BLT:SWISS 1->147 RL13_LACS1 1e-83 100.0 %
:PROS 106->128|PS00783|RIBOSOMAL_L13

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00207.1 GT:GENE rplM GT:PRODUCT LSU ribosomal protein L13P GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1478312..1478755) GB:FROM 1478312 GB:TO 1478755 GB:DIRECTION - GB:GENE rplM GB:PRODUCT LSU ribosomal protein L13P GB:NOTE COG0102 [J] Ribosomal protein L13 GB:PROTEIN_ID ABE00207.1 GB:DB_XREF GI:90821568 GB:GENE:GENE rplM LENGTH 147 SQ:AASEQ MRTTYIAKPGEVERKWYVVDATDVPLGRLSSAVASILRGKNKPTFTPNVDTGDYVIVINAEKVALTGRKASNKVYYHHSNHPGGLKARTAGDYREKDPEKLLALSVKGMLPKGTLGRQQAKKLHVYRGADHKHEAQQPEVLDINKLI GT:EXON 1|1-147:0| SW:ID RL13_LACS1 SW:DE RecName: Full=50S ribosomal protein L13; SW:GN Name=rplM; OrderedLocusNames=LSL_1403; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->147|RL13_LACS1|1e-83|100.0|147/147| GO:SWS:NREP 2 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| PROS 106->128|PS00783|RIBOSOMAL_L13|PDOC00625| BL:PDB:NREP 1 BL:PDB:REP 4->143|2i2tJ|2e-45|57.1|140/142| RP:PDB:NREP 1 RP:PDB:REP 7->141|3d5bN|1e-44|48.1|135/137| RP:PFM:NREP 1 RP:PFM:REP 16->141|PF00572|1e-34|60.3|126/128|Ribosomal_L13| HM:PFM:NREP 1 HM:PFM:REP 16->142|PF00572|2.2e-55|57.5|127/128|Ribosomal_L13| GO:PFM:NREP 4 GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00572|IPR005822| GO:PFM GO:0005622|"GO:intracellular"|PF00572|IPR005822| GO:PFM GO:0005840|"GO:ribosome"|PF00572|IPR005822| GO:PFM GO:0006412|"GO:translation"|PF00572|IPR005822| RP:SCP:NREP 1 RP:SCP:REP 4->141|1vs6J1|1e-57|56.5|138/140|c.21.1.1| HM:SCP:REP 16->143|1j3aA_|5.1e-45|55.2|116/142|c.21.1.1|1/1|Ribosomal protein L13| OP:NHOMO 1134 OP:NHOMOORG 1075 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111121111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 1---111-1---211-111-11111111111-1111-111111111111111111111-1111111111111111-111111111111-11111111111111112-141-1111121--111112-1-121-1-11-1-1-11111-111-11---1211-1211111111-112222M2222242541321121111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 143 STR:RPRED 97.3 SQ:SECSTR ###cccccccccccccEEEccTTccHHHHHHHHHHHHTGGGcTTccTTTcccccEEEcccTTccccccTTTTcEEEcccccTTcccEEEHHHHHHccTHHHHHHHHHHHccccHHHHHHHHTEEEcccccccccccccEEcccccc# DISOP:02AL 1-2| PSIPRED cccEEEccHHHccEEEEEEEcccccHHHHHHHHHHHHccccccEEccccccccEEEEEEccccEEEccccHHHEEHHHcccccccccccHHHHHcccHHHHHHHHHHccccccHHHHHHHHcccccccccccHHccccEEEEEcccc //