[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Lactobacillus salivarius UCC118 (lsal0)
Gene : rpoB
DDBJ      :rpoB         DNA-directed RNA polymerase beta chain
Swiss-Prot:RPOB_LACS1   RecName: Full=DNA-directed RNA polymerase subunit beta;         Short=RNAP subunit beta;         EC=2.7.7.6;AltName: Full=Transcriptase subunit beta;AltName: Full=RNA polymerase subunit beta;

Homologs  Archaea  68/68 : Bacteria  905/915 : Eukaryota  194/199 : Viruses  2/175   --->[See Alignment]
e.29.1
:1199 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->288 1ynjC PDBj 4e-52 39.1 %
:BLT:PDB   347->1155 1ynjC PDBj 0.0 59.2 %
:RPS:PDB   11->1152 2e2iB PDBj 0.0 23.3 %
:RPS:SCOP  145->1156 1i6vC  e.29.1.1 * 0.0 49.3 %
:HMM:SCOP  7->1153 1i50B_ e.29.1.1 * 0 49.4 %
:RPS:PFM   32->304 PF04563 * RNA_pol_Rpb2_1 9e-69 53.2 %
:RPS:PFM   371->474 PF04563 * RNA_pol_Rpb2_1 4e-32 54.8 %
:RPS:PFM   478->546 PF04565 * RNA_pol_Rpb2_3 1e-30 80.9 %
:RPS:PFM   565->623 PF10385 * RNA_pol_Rpb2_45 1e-16 64.4 %
:RPS:PFM   629->1070 PF00562 * RNA_pol_Rpb2_6 e-156 71.8 %
:RPS:PFM   1072->1145 PF04560 * RNA_pol_Rpb2_7 4e-10 48.6 %
:HMM:PFM   632->1070 PF00562 * RNA_pol_Rpb2_6 1.7e-161 63.6 382/386  
:HMM:PFM   31->474 PF04563 * RNA_pol_Rpb2_1 4.1e-38 41.2 165/229  
:HMM:PFM   1072->1146 PF04560 * RNA_pol_Rpb2_7 5.1e-32 64.0 75/83  
:HMM:PFM   478->547 PF04565 * RNA_pol_Rpb2_3 5.1e-30 58.8 68/68  
:HMM:PFM   556->623 PF10385 * RNA_pol_Rpb2_45 2.7e-28 63.6 66/66  
:BLT:SWISS 1->1171 RPOB_LACS1 0.0 100.0 %
:PROS 923->935|PS01166|RNA_POL_BETA
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99012.1 GT:GENE rpoB GT:PRODUCT DNA-directed RNA polymerase beta chain GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 235025..238624 GB:FROM 235025 GB:TO 238624 GB:DIRECTION + GB:GENE rpoB GB:PRODUCT DNA-directed RNA polymerase beta chain GB:NOTE COG0085 [K] DNA-directed RNA polymerase, beta subunit/140 kD subunit GB:PROTEIN_ID ABD99012.1 GB:DB_XREF GI:90820373 GB:GENE:GENE rpoB LENGTH 1199 SQ:AASEQ MNNLAGHLVKYGKHRVRRSYSRIKEVLDLPNLIEVQTDSYKWFLDEGLREMFDDIMPIEDFQGKLSLEFVDYQLLEPKYTVEEARQHDANYSAPLHVTLRLINHETGEIKSQDVFFGDFPLMTKQGTFIINGAERVIVSQLVRSPGVYFNSELDKNGRTNYGTTVIPNRGAWLEYETDAKNVAYVRIDRTRKIPLTELIRALGYGSDNEIVEILGSNSDSLMLTLEKDVHKNMDDSRVEESLKDIYERLRPGEPKTADSSRSLLTARFFDPKRYDLAPVGRYKINKKLDLKTRLLNLTVAETLADPDTGEIIVNKDEVIDKQVMDKLAPYLARDDFKTFTFHPSEEGVVQEPMTLQIVKVYSPKDPEKVVNVIGNANVDIQFKHITPADIVASMNYFFNLQEGMGSTDDIDHLGNRRTRSVGELLQNQFRIGLSRMERVVRERMSIQDTSTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGELSHKRRFSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYARINKYGFVETPYRRVSWETHKVTDKIDYLTADEEDNYVIAQANSPLNDDGSFVDDVVMARKKDDDVEISTEKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIKPHAPLVGTGIEYKAAHDSGVALISEHEGTVEYVDAREIRVRRDDGSLDKYKLMKFHRSNGGKNYNQTPIVRVGDRVDADEVLADGPAMENGELALGQNPLIAFMTWDGYNFEDAIAINERLVKEDVYTSIHIEEHESEARDTKLGPEEITREIPNVGEDALKNLDEFGIIRIGAEVKDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVQDVKIFTREGGDELSPGVNMMVRVYIAQKRKLQVGDKMAGRHGNKGTVSVVIPEEDMPFMPDGTPIDIMLSPMGVPSRMNIGQVLDLHLGMAARKLGIHVASPVFDGARDEDIWSALQEAGLPGDGKTVLYDGRTGEAFDNRIAVGVMYYLKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGMDMKVLDADKNEIELRDMDDEDDDIVNVDALKKFAKEQEEKKAKEAEQETAEKEETKTE GT:EXON 1|1-1199:0| SW:ID RPOB_LACS1 SW:DE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;AltName: Full=Transcriptase subunit beta;AltName: Full=RNA polymerase subunit beta; SW:GN Name=rpoB; OrderedLocusNames=LSL_0197; SW:KW Complete proteome; DNA-directed RNA polymerase;Nucleotidyltransferase; Transcription; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->1171|RPOB_LACS1|0.0|100.0|1171/1199| GO:SWS:NREP 4 GO:SWS GO:0003899|"GO:DNA-directed RNA polymerase activity"|DNA-directed RNA polymerase| GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| PROS 923->935|PS01166|RNA_POL_BETA|PDOC00896| SEG 1157->1164|dmddeddd| SEG 1172->1198|kkfakeqeekkakeaeqetaekeetkt| BL:PDB:NREP 2 BL:PDB:REP 18->288|1ynjC|4e-52|39.1|265/1114| BL:PDB:REP 347->1155|1ynjC|0.0|59.2|806/1114| RP:PDB:NREP 1 RP:PDB:REP 11->1152|2e2iB|0.0|23.3|1035/1143| RP:PFM:NREP 6 RP:PFM:REP 32->304|PF04563|9e-69|53.2|269/364|RNA_pol_Rpb2_1| RP:PFM:REP 371->474|PF04563|4e-32|54.8|104/364|RNA_pol_Rpb2_1| RP:PFM:REP 478->546|PF04565|1e-30|80.9|68/69|RNA_pol_Rpb2_3| RP:PFM:REP 565->623|PF10385|1e-16|64.4|59/66|RNA_pol_Rpb2_45| RP:PFM:REP 629->1070|PF00562|e-156|71.8|386/386|RNA_pol_Rpb2_6| RP:PFM:REP 1072->1145|PF04560|4e-10|48.6|74/86|RNA_pol_Rpb2_7| HM:PFM:NREP 5 HM:PFM:REP 632->1070|PF00562|1.7e-161|63.6|382/386|RNA_pol_Rpb2_6| HM:PFM:REP 31->474|PF04563|4.1e-38|41.2|165/229|RNA_pol_Rpb2_1| HM:PFM:REP 1072->1146|PF04560|5.1e-32|64.0|75/83|RNA_pol_Rpb2_7| HM:PFM:REP 478->547|PF04565|5.1e-30|58.8|68/68|RNA_pol_Rpb2_3| HM:PFM:REP 556->623|PF10385|2.7e-28|63.6|66/66|RNA_pol_Rpb2_45| GO:PFM:NREP 17 GO:PFM GO:0003677|"GO:DNA binding"|PF04563|IPR007644| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04563|IPR007644| GO:PFM GO:0006350|"GO:transcription"|PF04563|IPR007644| GO:PFM GO:0003677|"GO:DNA binding"|PF04563|IPR007644| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04563|IPR007644| GO:PFM GO:0006350|"GO:transcription"|PF04563|IPR007644| GO:PFM GO:0003677|"GO:DNA binding"|PF04565|IPR007645| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04565|IPR007645| GO:PFM GO:0006350|"GO:transcription"|PF04565|IPR007645| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF10385|IPR019462| GO:PFM GO:0006351|"GO:transcription, DNA-dependent"|PF10385|IPR019462| GO:PFM GO:0003677|"GO:DNA binding"|PF00562|IPR007120| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF00562|IPR007120| GO:PFM GO:0006350|"GO:transcription"|PF00562|IPR007120| GO:PFM GO:0003677|"GO:DNA binding"|PF04560|IPR007641| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04560|IPR007641| GO:PFM GO:0006350|"GO:transcription"|PF04560|IPR007641| RP:SCP:NREP 1 RP:SCP:REP 145->1156|1i6vC|0.0|49.3|1000/1113|e.29.1.1| HM:SCP:REP 7->1153|1i50B_|0|49.4|970/1207|e.29.1.1|1/1|beta and beta-prime subunits of DNA dependent RNA-polymerase| OP:NHOMO 1759 OP:NHOMOORG 1169 OP:PATTERN 11111111111111211111111222222222222222222222224222222211111111111211 1111111111111111111-11111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111-112111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111--1-1111-11111111111111111111-11111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 33233333833333233333333333333332333333333333333322332333333333333333-33333333-3333333333-35333333333333335337353534243333333342637Z3-5443322333423323232353434337G6334233-533844343e33334C56935C3343334 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1-- STR:NPRED 1146 STR:RPRED 95.6 SQ:SECSTR ##########ccccccTTHHHHHHHHHHTTcccHHHHHHHHHHHHTHHHHHHcccccccccccccEEEEEEEEEcccEccHHHHHHTTcccEEEEEEEEEcccccccccccccEEEEEEEccTTcTTccGGGccHHHHHHTTccTTccccccTTcccccHHTTcEEETTEEEEEcEEEEEccccEEETTEEEcccEEEEEccccccccccEEEcccccccccEEEEEccccccEEEEEEEEcTTEEEcccccccccEEETEEEEEccTTcccccEEEEcTTccccEEHHHHHHHTTcccTTTTGGGTcccTTHHHHHTTcHHHHHHHHHHHHTTTHTcccTTTccccHHHHHHccccccccccccccccHHccTTTccccccHHHHHHHHHHHHHHHHHHHTTccccccTTcGGGEEEEcHHHHHHHHHHHHHHHHTTTcccccccccHHHHHHHHHHHHccTTccccccGGGGTcccccccccHHHHHHHHTEEEcHHHHcccccccccccccccGGGTTTcccccccccTTTTTEEEccTTcEEccccccHHHHHHHTTTEEEcTTccTTTccccEEEEEcccEEEEEccHHHHHHHHHHHHHHTcccTTcEEEEETTTTEEEEEccTTcEEEccEEEccccccccEEcccHHHHHHHHHHHHHHHHTcccEETTGGGTccEEccHHHHcccccccTTccccccccGGccccTTccHHHHHHHHHHGGGccccccTTTTTccccGTTTGGGccccccccEEEcccccTTccccEEEcHHHHHHTTTcEEEEEEEEEccccccTTcccEEcccccccccccTTccTTccccTTcEEEcccEEEcEEcccccccccTTHHHHTTcccccccccccccEEccTTcEEEEEEEEEEEcTTcEEccTTccEEEEEEEEEEEccccccEEEcccccEEEEEEcccTTTccEETTcccccEEEcGGGcTTTTcHHHHHHHHHHHHHHHHTccEEccccccccHHHHHHHHHHHcccTTcEEcEEcTTTcccccccEEccccccEEccccHHHHcccccccccccccccccccTTTTccccccHHHHHHHHHHTcHHHHHHTTTTccccEEcccccTTccccTTTEEEEEEcHHHHHHHHHHHTTTcccccccccccccccc########################################### DISOP:02AL 1-6,8-8,1064-1072,1174-1200| PSIPRED cccccccccccccEEEEEEHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccEEEEEEEEEEEcccccHHHHHHccccEEEEEEEEEEEEEccccEEEEEEEEEEEcEEEccccEEEEccHHHHEHHHHHHcccEEEEEcccccccEEEEEEEEEcccEEEEEEEccccEEEEEEccEEEEEHHEEHHHHccccHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcHHHHHHHHHHcccccccEEEccccccccHHHHHHHHHHHHccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccHHHccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHccHHHHHHHHHHHccccccEEEEccccHHHHHHHHHEEcccccccccccccccccccccccccEEEccccccccccccHHHHHHHcEEEcccccccccEEEEEccccccccccccccHHHcccEEEEEEEEEEcccccHHHHHHHHHHccccEEEcccEEEEEEEcccEEEEEEEEEEEcccccccccccHHHHHHHccccccccccccccccHHHHccccccEEEEEccccEEEEEEccEEEEEcccccccEEEEEEEcccccccccccccccccccEEEcccEEcccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEEEEEEEEEccccccccccccccccHHHHHccccccccccccEEccccEEEEEEcccccccccccccEEEEEcccccccEEEEEEEEcccccEEEEEEEEEEcccccccccccEEEEEEEEEEcccccccHHHHHccccEEEEEEEEEcccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHccEEEEEEccccccHHHHHHHHHHccccccccEEEEccccccEEcccEEEEHHHHHHHHHHHcccEEEEEcccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEcccccccccccHHHHHHHHHHHHcccccEEEEccccEEEccccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //