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Lactobacillus salivarius UCC118 (lsal0)
Gene : rpoC
DDBJ      :rpoC         DNA-directed RNA polymerase beta' chain
Swiss-Prot:RPOC_LACS1   RecName: Full=DNA-directed RNA polymerase subunit beta';         Short=RNAP subunit beta';         EC=2.7.7.6;AltName: Full=Transcriptase subunit beta';AltName: Full=RNA polymerase subunit beta';

Homologs  Archaea  68/68 : Bacteria  906/915 : Eukaryota  195/199 : Viruses  2/175   --->[See Alignment]
e.29.1
:1221 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->1180 2ghoD PDBj 0.0 50.4 %
:RPS:PDB   6->173 2ab4A PDBj 8e-21 11.2 %
:RPS:PDB   220->1184 1ddqD PDBj 0.0 47.5 %
:RPS:SCOP  6->1184 2ghoD1  e.29.1.2 * 0.0 48.8 %
:HMM:SCOP  1->1184 1i50A_ e.29.1.2 * 0 47.7 %
:RPS:PFM   8->330 PF04997 * RNA_pol_Rpb1_1 6e-82 55.9 %
:RPS:PFM   333->475 PF00623 * RNA_pol_Rpb1_2 6e-37 55.2 %
:RPS:PFM   478->665 PF04983 * RNA_pol_Rpb1_3 4e-12 40.0 %
:RPS:PFM   692->756 PF05000 * RNA_pol_Rpb1_4 2e-08 40.0 %
:RPS:PFM   772->965,1014->1140 PF04998 * RNA_pol_Rpb1_5 2e-54 50.3 %
:HMM:PFM   5->331 PF04997 * RNA_pol_Rpb1_1 5.4e-100 44.4 306/338  
:HMM:PFM   772->1139 PF04998 * RNA_pol_Rpb1_5 1.5e-67 35.4 274/277  
:HMM:PFM   333->474 PF00623 * RNA_pol_Rpb1_2 5.7e-53 50.0 142/166  
:HMM:PFM   478->665 PF04983 * RNA_pol_Rpb1_3 7.7e-35 31.1 151/157  
:HMM:PFM   694->756 PF05000 * RNA_pol_Rpb1_4 2.2e-17 28.6 63/108  
:BLT:SWISS 1->1221 RPOC_LACS1 0.0 100.0 %
:PROS 491->500|PS00178|AA_TRNA_LIGASE_I
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99013.1 GT:GENE rpoC GT:PRODUCT DNA-directed RNA polymerase beta' chain GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 238653..242318 GB:FROM 238653 GB:TO 242318 GB:DIRECTION + GB:GENE rpoC GB:PRODUCT DNA-directed RNA polymerase beta' chain GB:NOTE COG0086 [K] DNA-directed RNA polymerase, beta' subunit/160 kD subunit GB:PROTEIN_ID ABD99013.1 GB:DB_XREF GI:90820374 GB:GENE:GENE rpoC LENGTH 1221 SQ:AASEQ MIDVNKFDSMQIGLASSDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWECACGKYKRIRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDMSPRALEEIIYFASYVVTDAGDTALEKKQLLTEGEYREKREEYGDGFKAAMGAEAIRTLLRDVDLEKECAELKEELREATGQKRTRAVRRLDILEAFLNSGNRPDWMVMDAIPVIPPDLRPMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPKLKLNQMGIPHEMALELFKPFMMRELVKREMASNIKNAKRKIERRDEDIWDVLDDVIKEHPVLLNRAPTLHRLGIQAFEPVLVNGKAMRLHPLACEAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHILAPKDGKPIISPSQDMTIGNYYITLEEAGREGEGMVFKDVNEVRTAYQNGYVHLHTRIGLQASSLAKLGTPFTDWQKERILITTAGKAIFNEILPADFPFLNEPTQENLTGMTPDKYFVEPGTDIKEFIKNQPLVGPFKSGFLSDIIAQVYKEYKVTATAELLDRMKDLGYYESTKSGLTVGIADVTVLKEKPEIIEQAHKNVATVAKQFRRGLITDEERYNRVISIWNKAKDDIQAKLVENMDPSNPIQMMSDSGARGNISNFTQLSGMRGLMAAPNGKTMELPVISNFREGLSVLEMFLSSHGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREEDCHTDRGLDVTAITEGNEMIEPLYDRILGRYTMKEVKDPNTGEIIVPANVLVEESEARKIVDAGVQKVTIRSAFTCNTRHGVCERCYGRNLATGDEVEVGEAVGTVAAQSIGEPGTQLTMRNFHQGGVAGGDDITQGLPRVQELFEARNPKGRAVITEVTGVVDTVEENPAERTKEVTVKGETDTRTYSLPFTSVLKVKEGDQVHRGDALTVGSIDPKELIKVRDVLSTENYILREVQKVYRMQGVDISDKHIEIMTRQMLRKVRIMDPGDTDMLPGTLLDISQFKDRNTSAIIEGRIPATARPVLLGITKAALETNSFLSAASFQETTRVLTDAAIRGKNDPLVGLKENVIIGKTIPAGTGMKKYHDIEPEVVNSNVTDGVYSISELEEKINEQQNNVESSN GT:EXON 1|1-1221:0| SW:ID RPOC_LACS1 SW:DE RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP subunit beta'; EC=2.7.7.6;AltName: Full=Transcriptase subunit beta';AltName: Full=RNA polymerase subunit beta'; SW:GN Name=rpoC; OrderedLocusNames=LSL_0198; SW:KW Complete proteome; DNA-directed RNA polymerase;Nucleotidyltransferase; Transcription; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->1221|RPOC_LACS1|0.0|100.0|1221/1221| GO:SWS:NREP 4 GO:SWS GO:0003899|"GO:DNA-directed RNA polymerase activity"|DNA-directed RNA polymerase| GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| PROS 491->500|PS00178|AA_TRNA_LIGASE_I|PDOC00161| SEG 152->163|egeyrekreeyg| SEG 184->198|lekecaelkeelrea| SEG 259->275|rrvinrnnrlkrlldln| SEG 910->926|atgdevevgeavgtvaa| SEG 973->986|vitevtgvvdtvee| BL:PDB:NREP 1 BL:PDB:REP 10->1180|2ghoD|0.0|50.4|1140/1196| RP:PDB:NREP 2 RP:PDB:REP 6->173|2ab4A|8e-21|11.2|161/300| RP:PDB:REP 220->1184|1ddqD|0.0|47.5|946/1077| RP:PFM:NREP 5 RP:PFM:REP 8->330|PF04997|6e-82|55.9|304/326|RNA_pol_Rpb1_1| RP:PFM:REP 333->475|PF00623|6e-37|55.2|143/166|RNA_pol_Rpb1_2| RP:PFM:REP 478->665|PF04983|4e-12|40.0|145/145|RNA_pol_Rpb1_3| RP:PFM:REP 692->756|PF05000|2e-08|40.0|65/107|RNA_pol_Rpb1_4| RP:PFM:REP 772->965,1014->1140|PF04998|2e-54|50.3|320/471|RNA_pol_Rpb1_5| HM:PFM:NREP 5 HM:PFM:REP 5->331|PF04997|5.4e-100|44.4|306/338|RNA_pol_Rpb1_1| HM:PFM:REP 772->1139|PF04998|1.5e-67|35.4|274/277|RNA_pol_Rpb1_5| HM:PFM:REP 333->474|PF00623|5.7e-53|50.0|142/166|RNA_pol_Rpb1_2| HM:PFM:REP 478->665|PF04983|7.7e-35|31.1|151/157|RNA_pol_Rpb1_3| HM:PFM:REP 694->756|PF05000|2.2e-17|28.6|63/108|RNA_pol_Rpb1_4| GO:PFM:NREP 15 GO:PFM GO:0003677|"GO:DNA binding"|PF04997|IPR007080| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04997|IPR007080| GO:PFM GO:0006350|"GO:transcription"|PF04997|IPR007080| GO:PFM GO:0003677|"GO:DNA binding"|PF00623|IPR000722| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF00623|IPR000722| GO:PFM GO:0006350|"GO:transcription"|PF00623|IPR000722| GO:PFM GO:0003677|"GO:DNA binding"|PF04983|IPR007066| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04983|IPR007066| GO:PFM GO:0006350|"GO:transcription"|PF04983|IPR007066| GO:PFM GO:0003677|"GO:DNA binding"|PF05000|IPR007083| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF05000|IPR007083| GO:PFM GO:0006350|"GO:transcription"|PF05000|IPR007083| GO:PFM GO:0003677|"GO:DNA binding"|PF04998|IPR007081| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04998|IPR007081| GO:PFM GO:0006350|"GO:transcription"|PF04998|IPR007081| RP:SCP:NREP 1 RP:SCP:REP 6->1184|2ghoD1|0.0|48.8|1151/1196|e.29.1.2| HM:SCP:REP 1->1184|1i50A_|0|47.7|1083/1449|e.29.1.2|1/1|beta and beta-prime subunits of DNA dependent RNA-polymerase| OP:NHOMO 1730 OP:NHOMOORG 1171 OP:PATTERN 11111111111111111111111111111111112111111111112111111111111111111111 1111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111--1-1111-11111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 34233323934333333232333333333232333333333333333333333233333333232333123233343-4332222133-34333333333333334335463533333313333562324K3-3453323333222323242253123235L633G3323G33634373W333-5A5293482353334 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1-- STR:NPRED 1211 STR:RPRED 99.2 SQ:SECSTR #ccccccccEEcccccHHHHHHHcccccccccccccTTccccccccccccccccccccccccccEEEccTTcEEcccccccTTTccccccccEEEEEEEEEcccTTHHHHHHHTTTETTEEcccTTccHHHHHTTcccHHHHHHHHGGGTccccccccccccEccccccccccccccEEEEccccEEEEcccEEcHHHHHHHHHcccTHHHHHccccTTccccccccccccccccccGccccccccccccGGGTTTTTcHHHHHHHHTTTcccccccTHHHHHHHHHHHHHHHHHTTccccccccccccccccccTTTTTTTccccccTTcccccccccEEEEEEEccccTTTcccccTTHHHHHHHHHHHHHHHHTcccccHHHHHHHTcccccHHHTTHHHHTTTccEEccccccccGGGTcEEcccccccccEEEcTTTHHHHcccccccEEEEcccccGGGTTTTcccccTTTcccccTTccccccccTTTHHHHHHTccccccccccccccccccHHHHHTTccccccccccccccccccccccccccccTTTHHHHHTTcccccccccTTcccccccccccHHHHHHHHHHHHHTTcTTTTTTcccccTTccccHHHHHHHHHHTTcTHHHHHHHHHHHHHHHHHHHHHHccccccTTTcccTTHHHHHHHTTTTTHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccTTTTTTcccccHHHHHHHcccccccccTTcccccccccTTccccTTcTTHHHHHHHHHHTTTGGGTTTTTcccTHHHHHHTTTTccccccccEccccEEEEccEEcTHHHHHHTTccccEEEccccccEEEcccccHHHHcccHHHHHTTTcccccEEEEccccccccTTTcccccccccTTcccccccccccHHHHGGGGTTGGGcccccccccccccccccccccHHHHHHHHTTccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccTTcccccccHHHHccHHHHHHHHHHHHHHHHHHTTccccTTcTHHHHHHHHTcEEEEccccccccccccEEHHHHHHHHHTTTcccccccccEEEccccTHHHHHcccccTTTTTcccTTHHHHHHHHccccGGGGccTTHHHHTcccccccccccccccEEEEEEEEEEcTTccEEEEEEEEEE######### DISOP:02AL 1-3,194-200,244-250,252-252,301-322,1190-1204,1211-1214,1216-1222| PSIPRED ccccccccEEEEEcccHHHHHHcccEEEEcccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHccccccccHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHccccHHHEEEEEEcccccccccEEEEcccccccccHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccEEEcccccEEEEEEcccHHHHHHHcccEEccHHHHHHHHHHHHHccHHHccccccHHHHHHHHHcccEEEEccccccccccEEEEEEEEEcccEEEEcHHHcccccccccccEEEEEccccHHHHHHHHHHHcccccEEccccccEEEEEHHHHHHHHHHHHHcccccccccEEEccHHHHHHHHHccccccccccccccccccccccccccccccEEEEEcccHHHHHHHcccccccccccccccccccccccEEEEccccEEEEEEcccEEEccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcEEEEHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHHHHHHcccccEEEcccccHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccEEEEcccEEcccEEEEEEEEcccEEcHHHHHHHccEEHHHccccccccEEEcccccccHHHHHHHHHccccEEEEEEccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccEEEEEEEEEcccccEEEEEEccHHHHHHHHHcccEEEEEEEcccEEEEEEcccccEEEEEcccEEEEccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHEEccccEEcHHHHHHHHHHcccEEEEEccccccEEccEEccHHHHHHHHHHHHHcccEEEEEEEEEEEEEccccccccHHHccccccHHHHHHHHHHcccccccccccHHEEEcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccc 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