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Lactobacillus salivarius UCC118 (lsal0)
Gene : rpsA
DDBJ      :rpsA         SSU ribosomal protein S1P
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  882/915 : Eukaryota  152/199 : Viruses  0/175   --->[See Alignment]
b.40.4
:399 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   115->192 1yz6A PDBj 3e-04 25.0 %
:BLT:PDB   197->270 1sroA PDBj 1e-15 54.8 %
:BLT:PDB   286->355 2oceA PDBj 2e-13 47.1 %
:RPS:PDB   96->358 3bzcA PDBj 6e-27 18.9 %
:RPS:SCOP  113->180 1y14B1  b.40.4.5 * 7e-06 13.2 %
:RPS:SCOP  183->294 1wi5A  b.40.4.5 * 3e-23 24.1 %
:RPS:SCOP  282->355 1sroA  b.40.4.5 * 4e-15 47.3 %
:HMM:SCOP  3->123 1wi5A_ b.40.4.5 * 1.8e-21 34.2 %
:HMM:SCOP  101->181 1q46A2 b.40.4.5 * 7.2e-19 34.6 %
:HMM:SCOP  198->282 1go3E1 b.40.4.5 * 1.6e-29 58.8 %
:HMM:SCOP  264->377 1wi5A_ b.40.4.5 * 1.4e-30 45.1 %
:RPS:PFM   198->267 PF00575 * S1 5e-14 57.1 %
:RPS:PFM   286->353 PF00575 * S1 4e-10 42.6 %
:HMM:PFM   21->80 PF00575 * S1 3.4e-09 31.0 58/74  
:HMM:PFM   111->180 PF00575 * S1 5e-18 40.0 70/74  
:HMM:PFM   200->269 PF00575 * S1 2.5e-27 58.6 70/74  
:HMM:PFM   284->355 PF00575 * S1 3.4e-24 48.6 72/74  
:HMM:PFM   350->387 PF00428 * Ribosomal_60s 0.00048 31.6 38/88  
:BLT:SWISS 32->395 RS1_LEULA 2e-95 51.5 %
:REPEAT 4|44->97|108->180|194->269|279->355
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99697.1 GT:GENE rpsA GT:PRODUCT SSU ribosomal protein S1P GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(910860..912059) GB:FROM 910860 GB:TO 912059 GB:DIRECTION - GB:GENE rpsA GB:PRODUCT SSU ribosomal protein S1P GB:NOTE COG0539 [J] Ribosomal protein S1 GB:PROTEIN_ID ABD99697.1 GB:DB_XREF GI:90821058 GB:GENE:GENE rpsA LENGTH 399 SQ:AASEQ MSMSETEANLLEEALNSVKEVKVGDVVKGEVLTIDESNQVIVGIENTGVEGVVPVRELSVNADKVADTYKAGDMLDLVVIARIGSDKEGGSYLLSQRRLEARRVWNEIEDKFKAGETIKAPVTQVVKGGLVVDAGVRGFVPASMVSDHFVEDLNQFKGQELELKIVEIEPSDNRLILSRKELVQAEREAKRQAVMEKLVAGDVVEGKVARLTNFGAFIDLGGVDGLVHVSEISYERVNKPADALKVGQEVKVKVLSVDAEKGRISLSIKQTLPEPWEQVPEQVAEGDVLEGTVKRLTSFGAFVEVLPGVEGLVHISQISHKHIATPNEVLTSGEKVQVKVLSVDAADHRLALSIKALQEKPAVEKKEAAPKKEEKVEIPEEDTGFTLGDIVGDQLKDEQ GT:EXON 1|1-399:0| BL:SWS:NREP 1 BL:SWS:REP 32->395|RS1_LEULA|2e-95|51.5|361/429| NREPEAT 1 REPEAT 4|44->97|108->180|194->269|279->355| SEG 7->16|eanlleealn| SEG 18->31|vkevkvgdvvkgev| SEG 359->381|ekpavekkeaapkkeekveipee| BL:PDB:NREP 3 BL:PDB:REP 115->192|1yz6A|3e-04|25.0|78/261| BL:PDB:REP 197->270|1sroA|1e-15|54.8|73/76| BL:PDB:REP 286->355|2oceA|2e-13|47.1|70/729| RP:PDB:NREP 1 RP:PDB:REP 96->358|3bzcA|6e-27|18.9|259/730| RP:PFM:NREP 2 RP:PFM:REP 198->267|PF00575|5e-14|57.1|70/74|S1| RP:PFM:REP 286->353|PF00575|4e-10|42.6|68/74|S1| HM:PFM:NREP 5 HM:PFM:REP 21->80|PF00575|3.4e-09|31.0|58/74|S1| HM:PFM:REP 111->180|PF00575|5e-18|40.0|70/74|S1| HM:PFM:REP 200->269|PF00575|2.5e-27|58.6|70/74|S1| HM:PFM:REP 284->355|PF00575|3.4e-24|48.6|72/74|S1| HM:PFM:REP 350->387|PF00428|0.00048|31.6|38/88|Ribosomal_60s| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 3 RP:SCP:REP 113->180|1y14B1|7e-06|13.2|68/86|b.40.4.5| RP:SCP:REP 183->294|1wi5A|3e-23|24.1|112/119|b.40.4.5| RP:SCP:REP 282->355|1sroA|4e-15|47.3|73/76|b.40.4.5| HM:SCP:REP 3->123|1wi5A_|1.8e-21|34.2|117/0|b.40.4.5|1/4|Nucleic acid-binding proteins| HM:SCP:REP 101->181|1q46A2|7.2e-19|34.6|81/0|b.40.4.5|2/4|Nucleic acid-binding proteins| HM:SCP:REP 198->282|1go3E1|1.6e-29|58.8|85/0|b.40.4.5|3/4|Nucleic acid-binding proteins| HM:SCP:REP 264->377|1wi5A_|1.4e-30|45.1|113/0|b.40.4.5|4/4|Nucleic acid-binding proteins| OP:NHOMO 2362 OP:NHOMOORG 1039 OP:PATTERN ---------------------------------1-11-----1------------1------------ 3342111211111112222-212221222222122212221122111111111111111111111112121222221111212212113333231121112111132312222222222211112111122221315554411-42223433322332232222222334323222223222223322112335333333334333333445555334444545544445413333333333333333454433121221211122223233311-3222224222322333333333323333333333333221333111237445444445455542555333444342232244534343134443123223222222222112112211211222222222222-321221212212222222222222113322222222223222222221112123111222111111111112122111-2111122222222222222222222222233222222223333322333333333333332223212222222222322222313432422442231444233444333344222111111111111111111132122223233332333322222323222222332232-2333122222233333333333333333-333333332333333333333333333333322322233333333333333313333333333332133222222222223332222212332323333333333333333333222222222312211111111123332333333333322333333333333222222333311111111312-------------------------1211111-11111 ----11------11111112222222211212121111111112222122221212211212111111111111111-2121111112-12212112221111111-13-311122--1-111-221111711112---1-11-2-1-1-2-------1-----1------11112333V35314B78627B133---3 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 325 STR:RPRED 81.5 SQ:SECSTR #################################EETTEEEEEETTTTTEEEEEcGGGcccccccHHHHTccccEEEEEEcEEEEEETTTTEEEEEHHTTccGGGGTcGccHHHHHHHHHHHHHHHHHHHcEETccHHHHHTcTTccHHHHHHHHHHHHHHcccccGGGGGGcTTccHHHHHHHGGGEEcTTcccccccGGGGccccGGGHHHHHHHHHHHTcHHHTTcHHHHHHccGGGTccccccHHHHHHHHHHHHcTTccccccccTTTTcccccccTTccTTcccccEEEEEETTEEEEEcccccEEEEETTTccccccccHHHHccTTccccccEEEEETTTTEEEEcccccc######################################### DISOP:02AL 1-8,359-380,398-400| PSIPRED cccHHHHHHHHHHHHHHHHHcccccEEcccEEEEEcccEEEEEEccccEEEEEEHHHcccccccHHHHcccccEEEEEEEEEEcccccccEEEEEHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccEEEEccEEEEEEHHHccccccccHHHHcccEEEEEEEEEEccccEEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEccEEccEEEEEcccEEEEEEEEHccccccccHHHEEccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccEEEEEEEEEccccEEEEEcccEEEEEEEEEccccccccHHHEEEcccEEEEEEEEEcccccEEEEEHHHHHHccccHHHHcccccHHccccccccccccHHHHHHHHHHccc //