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Lactobacillus salivarius UCC118 (lsal0)
Gene : rpsC
DDBJ      :rpsC         SSU ribosomal protein S3P
Swiss-Prot:RS3_LACS1    RecName: Full=30S ribosomal protein S3;

Homologs  Archaea  60/68 : Bacteria  910/915 : Eukaryota  11/199 : Viruses  0/175   --->[See Alignment]
d.52.3d.53.1
:218 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->206 1vs5C PDBj 2e-71 59.0 %
:RPS:PDB   1->205 3bbnC PDBj 5e-69 39.5 %
:RPS:SCOP  2->105 1fjgC1  d.52.3.1 * 2e-39 49.0 %
:RPS:SCOP  106->206 1fjgC2  d.53.1.1 * 3e-41 57.4 %
:HMM:SCOP  2->105 1fjgC1 d.52.3.1 * 5.6e-39 56.7 %
:HMM:SCOP  106->206 1fjgC2 d.53.1.1 * 2.9e-38 64.4 %
:RPS:PFM   1->58 PF00417 * Ribosomal_S3_N 3e-13 56.9 %
:RPS:PFM   63->115 PF07650 * KH_2 3e-09 57.4 %
:RPS:PFM   118->201 PF00189 * Ribosomal_S3_C 1e-24 67.9 %
:HMM:PFM   118->201 PF00189 * Ribosomal_S3_C 1.6e-34 58.3 84/85  
:HMM:PFM   1->60 PF00417 * Ribosomal_S3_N 7e-23 46.7 60/66  
:HMM:PFM   62->115 PF07650 * KH_2 3.4e-18 56.2 48/59  
:BLT:SWISS 1->218 RS3_LACS1 e-123 100.0 %
:PROS 162->196|PS00548|RIBOSOMAL_S3

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00233.1 GT:GENE rpsC GT:PRODUCT SSU ribosomal protein S3P GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1492402..1493058) GB:FROM 1492402 GB:TO 1493058 GB:DIRECTION - GB:GENE rpsC GB:PRODUCT SSU ribosomal protein S3P GB:NOTE COG0092 [J] Ribosomal protein S3 GB:PROTEIN_ID ABE00233.1 GB:DB_XREF GI:90821594 GB:GENE:GENE rpsC LENGTH 218 SQ:AASEQ MGQKVNPTGLRVGIIRDWDAKWYAEKDFASNLHEDLRIRKYIESKLADASVSTVEIERAAKRVNISIHTAKPGMVIGKGGSEVEKLRKELNNLTGKRVHINIVEIKKPDLDAKLVGESIAEQLENRVAFRRAMKQAIQRTMRAGAKGIKVQVAGRLNGADMSRVERFSEGTVPLHTLRADIDYSWVEAHTTYGKLGVKTWIYRGEVLPAKKENSKGGK GT:EXON 1|1-218:0| SW:ID RS3_LACS1 SW:DE RecName: Full=30S ribosomal protein S3; SW:GN Name=rpsC; OrderedLocusNames=LSL_1429; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->218|RS3_LACS1|e-123|100.0|218/218| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 162->196|PS00548|RIBOSOMAL_S3|PDOC00474| BL:PDB:NREP 1 BL:PDB:REP 2->206|1vs5C|2e-71|59.0|205/206| RP:PDB:NREP 1 RP:PDB:REP 1->205|3bbnC|5e-69|39.5|205/217| RP:PFM:NREP 3 RP:PFM:REP 1->58|PF00417|3e-13|56.9|58/68|Ribosomal_S3_N| RP:PFM:REP 63->115|PF07650|3e-09|57.4|47/49|KH_2| RP:PFM:REP 118->201|PF00189|1e-24|67.9|84/84|Ribosomal_S3_C| HM:PFM:NREP 3 HM:PFM:REP 118->201|PF00189|1.6e-34|58.3|84/85|Ribosomal_S3_C| HM:PFM:REP 1->60|PF00417|7e-23|46.7|60/66|Ribosomal_S3_N| HM:PFM:REP 62->115|PF07650|3.4e-18|56.2|48/59|KH_2| GO:PFM:NREP 9 GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00417|IPR008282| GO:PFM GO:0005622|"GO:intracellular"|PF00417|IPR008282| GO:PFM GO:0005840|"GO:ribosome"|PF00417|IPR008282| GO:PFM GO:0006412|"GO:translation"|PF00417|IPR008282| GO:PFM GO:0003723|"GO:RNA binding"|PF07650|IPR004044| GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00189|IPR001351| GO:PFM GO:0005622|"GO:intracellular"|PF00189|IPR001351| GO:PFM GO:0005840|"GO:ribosome"|PF00189|IPR001351| GO:PFM GO:0006412|"GO:translation"|PF00189|IPR001351| RP:SCP:NREP 2 RP:SCP:REP 2->105|1fjgC1|2e-39|49.0|104/105|d.52.3.1| RP:SCP:REP 106->206|1fjgC2|3e-41|57.4|101/101|d.53.1.1| HM:SCP:REP 2->105|1fjgC1|5.6e-39|56.7|104/0|d.52.3.1|1/1|Prokaryotic type KH domain (KH-domain type II)| HM:SCP:REP 106->206|1fjgC2|2.9e-38|64.4|101/101|d.53.1.1|1/1|Ribosomal protein S3 C-terminal domain| OP:NHOMO 990 OP:NHOMOORG 981 OP:PATTERN 1111-111111111111-11---1111111111111111111111111111111-1111-11111-11 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 -----------1----------------------------------11-------------------------------------------------------------1---------------------------------------------------------1------11----------134--1------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 206 STR:RPRED 94.5 SQ:SECSTR ccccccTTTccTTTTccccccccccTccHHHHHHHHHHHcccccTTTTTcEEEEEccccccccccEEEEccTTTTccccccTTHHHHHHHHccccccccccEEEcccTTTcHHHHHHHcTTTTTTTccHHHHHTHHHHHHHTTcccEEEEEcccccTTcccccccEEEEEcccccccTTcccccEEEccccccccEEEEEEEcccE############ DISOP:02AL 1-1,209-219| PSIPRED cccEEccccEEEcccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccEEEEEEEcccccEEccccccHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccEEEEEEccccccHHEEEEEEEcccccccccccccccEEEEEEEEcccEEEEEEEEEccccccccHHHHcccc //