[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Lactobacillus salivarius UCC118 (lsal0)
Gene : rpsD
DDBJ      :rpsD         SSU ribosomal protein S4P
Swiss-Prot:RS4_LACS1    RecName: Full=30S ribosomal protein S4;

Homologs  Archaea  31/68 : Bacteria  912/915 : Eukaryota  11/199 : Viruses  0/175   --->[See Alignment]
d.66.1
:201 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   44->201 1c05A PDBj 9e-58 68.2 %
:RPS:PDB   1->201 3bbnD PDBj 8e-43 40.6 %
:RPS:SCOP  3->201 1fjgD  d.66.1.2 * 3e-48 55.1 %
:HMM:SCOP  2->201 1fjgD_ d.66.1.2 * 9e-71 55.3 %
:RPS:PFM   3->92 PF00163 * Ribosomal_S4 3e-12 50.6 %
:RPS:PFM   94->139 PF01479 * S4 2e-11 60.9 %
:HMM:PFM   93->140 PF01479 * S4 2.2e-26 64.6 48/48  
:HMM:PFM   2->92 PF00163 * Ribosomal_S4 6.4e-26 47.8 90/94  
:HMM:PFM   138->196 PF11852 * DUF3372 0.00011 26.3 57/168  
:BLT:SWISS 1->201 RS4_LACS1 e-114 100.0 %
:PROS 91->115|PS00632|RIBOSOMAL_S4

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99885.1 GT:GENE rpsD GT:PRODUCT SSU ribosomal protein S4P GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 1101963..1102568 GB:FROM 1101963 GB:TO 1102568 GB:DIRECTION + GB:GENE rpsD GB:PRODUCT SSU ribosomal protein S4P GB:NOTE COG0522 [J] Ribosomal protein S4 and related proteins GB:PROTEIN_ID ABD99885.1 GB:DB_XREF GI:90821246 GB:GENE:GENE rpsD LENGTH 201 SQ:AASEQ MSRYTGPSWKVSRRLGFSLSGTGKELSRRPYAPGQHGQDRRGSLSEYGLQLREKQKLRMTYGLTERQFSNLFKRAGKIREGKHGDNFMILLERRLDNVVYRLGLASTRRQARQLVNHGHITVDGKRVDIPSYEVEPGQVISLRERSKDLQIVKEALEAVVGRVPFVNFDENKMEGTLVRLPDREELDANIDEALVVEFYNR GT:EXON 1|1-201:0| SW:ID RS4_LACS1 SW:DE RecName: Full=30S ribosomal protein S4; SW:GN Name=rpsD; OrderedLocusNames=LSL_1077; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->201|RS4_LACS1|e-114|100.0|201/201| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 91->115|PS00632|RIBOSOMAL_S4|PDOC00549| BL:PDB:NREP 1 BL:PDB:REP 44->201|1c05A|9e-58|68.2|157/159| RP:PDB:NREP 1 RP:PDB:REP 1->201|3bbnD|8e-43|40.6|197/199| RP:PFM:NREP 2 RP:PFM:REP 3->92|PF00163|3e-12|50.6|89/93|Ribosomal_S4| RP:PFM:REP 94->139|PF01479|2e-11|60.9|46/46|S4| HM:PFM:NREP 3 HM:PFM:REP 93->140|PF01479|2.2e-26|64.6|48/48|S4| HM:PFM:REP 2->92|PF00163|6.4e-26|47.8|90/94|Ribosomal_S4| HM:PFM:REP 138->196|PF11852|0.00011|26.3|57/168|DUF3372| GO:PFM:NREP 3 GO:PFM GO:0005622|"GO:intracellular"|PF00163|IPR001912| GO:PFM GO:0019843|"GO:rRNA binding"|PF00163|IPR001912| GO:PFM GO:0003723|"GO:RNA binding"|PF01479|IPR002942| RP:SCP:NREP 1 RP:SCP:REP 3->201|1fjgD|3e-48|55.1|198/208|d.66.1.2| HM:SCP:REP 2->201|1fjgD_|9e-71|55.3|199/208|d.66.1.2|1/1|Alpha-L RNA-binding motif| OP:NHOMO 991 OP:NHOMOORG 954 OP:PATTERN -------111111111-------1-11-11111-1-1111111111-111------------------ 1111111111111111111-1111111111111111111111121111111111111111221111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111323122222221211122222211111211111111111111111111121111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111122211111111121112121111111111111111111111111112211111111111111111111111111111111111111121111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 ---------------------------------------------------------------------------11111------------------------------------------------------------------------------1--------------1-1----------1-1--2------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 201 STR:RPRED 100.0 SQ:SECSTR ccccccccTTcccccccccccccccTTccccccccccccccccccTTHHHHTTHHHHHHHHTccHHHHHHHHHHHHHcccccTTTTTTHHHHccTTTTTTTTTcccccHHHHHHHHTTcEEETTEEcccTTccccTTEEEEEcccTTccHHHHHHcccTTcccTTEEEETTTTEEEEcccccGGGccccccHHHHTTTccc DISOP:02AL 1-1,23-47,148-154| PSIPRED cccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccEEEccEEEEcccEEEccccEEEEccccHHHHHHHHHHHHHHcccccEEEcccccEEEEEEcccHHHccccccccEEEEEEcc //