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Lactobacillus salivarius UCC118 (lsal0)
Gene : rpsE
DDBJ      :rpsE         SSU ribosomal protein S5P
Swiss-Prot:RS5_LACS1    RecName: Full=30S ribosomal protein S5;

Homologs  Archaea  56/68 : Bacteria  907/915 : Eukaryota  163/199 : Viruses  0/175   --->[See Alignment]
d.14.1d.50.1
:166 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   33->148 1pkpA PDBj 3e-40 64.7 %
:RPS:PDB   10->158 3d5aE PDBj 2e-40 41.6 %
:RPS:SCOP  10->75 1fjgE2  d.50.1.2 * 6e-21 54.5 %
:RPS:SCOP  80->157 1fjgE1  d.14.1.1 * 8e-09 33.3 %
:HMM:SCOP  10->78 1fjgE2 d.50.1.2 * 1.2e-24 65.2 %
:HMM:SCOP  79->159 1fjgE1 d.14.1.1 * 9.3e-26 54.3 %
:RPS:PFM   11->75 PF00333 * Ribosomal_S5 2e-18 70.8 %
:RPS:PFM   85->157 PF03719 * Ribosomal_S5_C 7e-11 43.8 %
:HMM:PFM   10->75 PF00333 * Ribosomal_S5 4.4e-35 68.2 66/67  
:HMM:PFM   85->158 PF03719 * Ribosomal_S5_C 3.5e-31 55.4 74/74  
:BLT:SWISS 1->166 RS5_LACS1 3e-79 100.0 %
:PROS 28->60|PS00585|RIBOSOMAL_S5
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00222.1 GT:GENE rpsE GT:PRODUCT SSU ribosomal protein S5P GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1488030..1488530) GB:FROM 1488030 GB:TO 1488530 GB:DIRECTION - GB:GENE rpsE GB:PRODUCT SSU ribosomal protein S5P GB:NOTE COG0098 [J] Ribosomal protein S5 GB:PROTEIN_ID ABE00222.1 GB:DB_XREF GI:90821583 GB:GENE:GENE rpsE LENGTH 166 SQ:AASEQ MAFIDPAQLDLEDRVVAINRITKVVKGGRRLRFAALVVVGDHNGHVGFGTGKAQEVPEAIRKAVDAARKNLIEVPTVGTTLPHEVIGQYSGSRIMLKPAIAGSGVAAGGAVRAVMELAGIADVTSKSLGSNTPVNVVRATFDGLVNMKDAESVAKLRGVSVQHLAE GT:EXON 1|1-166:0| SW:ID RS5_LACS1 SW:DE RecName: Full=30S ribosomal protein S5; SW:GN Name=rpsE; OrderedLocusNames=LSL_1418; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->166|RS5_LACS1|3e-79|100.0|166/166| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 28->60|PS00585|RIBOSOMAL_S5|PDOC00505| SEG 99->114|aiagsgvaaggavrav| BL:PDB:NREP 1 BL:PDB:REP 33->148|1pkpA|3e-40|64.7|116/145| RP:PDB:NREP 1 RP:PDB:REP 10->158|3d5aE|2e-40|41.6|149/151| RP:PFM:NREP 2 RP:PFM:REP 11->75|PF00333|2e-18|70.8|65/67|Ribosomal_S5| RP:PFM:REP 85->157|PF03719|7e-11|43.8|73/74|Ribosomal_S5_C| HM:PFM:NREP 2 HM:PFM:REP 10->75|PF00333|4.4e-35|68.2|66/67|Ribosomal_S5| HM:PFM:REP 85->158|PF03719|3.5e-31|55.4|74/74|Ribosomal_S5_C| GO:PFM:NREP 9 GO:PFM GO:0003723|"GO:RNA binding"|PF00333|IPR013810| GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00333|IPR013810| GO:PFM GO:0005622|"GO:intracellular"|PF00333|IPR013810| GO:PFM GO:0005840|"GO:ribosome"|PF00333|IPR013810| GO:PFM GO:0006412|"GO:translation"|PF00333|IPR013810| GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF03719|IPR005324| GO:PFM GO:0005622|"GO:intracellular"|PF03719|IPR005324| GO:PFM GO:0005840|"GO:ribosome"|PF03719|IPR005324| GO:PFM GO:0006412|"GO:translation"|PF03719|IPR005324| RP:SCP:NREP 2 RP:SCP:REP 10->75|1fjgE2|6e-21|54.5|66/69|d.50.1.2| RP:SCP:REP 80->157|1fjgE1|8e-09|33.3|78/81|d.14.1.1| HM:SCP:REP 10->78|1fjgE2|1.2e-24|65.2|69/69|d.50.1.2|1/1|dsRNA-binding domain-like| HM:SCP:REP 79->159|1fjgE1|9.3e-26|54.3|81/81|d.14.1.1|1/1|Ribosomal protein S5 domain 2-like| OP:NHOMO 1340 OP:NHOMOORG 1126 OP:PATTERN 1111-11111111111-111111111111111111--1-1---111-11111111111111-11-1-1 1111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111-11111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 1111112-522-2211111-----1--1111112121111111111111111111111-2221112222-21-2-222222-----21-1311111111-112356-1-1411112211---11493634K5-26G2---4-11-11---1-12111111-221121313311132223f4332252651821122222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 161 STR:RPRED 97.0 SQ:SECSTR ###EEEEEEccEEEEEEEEEEEccccccccEEEEEEEEEEcccccEEEEEEEEccHHHHHHHHHHHHHHccccccccTTcccccEEEEETTEEEEEEEccTTcEEEccHHHHHHHHTTTccEEEEEEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHcccccc## PSIPRED ccccccccccccEEEEEEccccEEEccccEEEEEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHccEEEEEEcccEEEccEEEEccEEEEEEEccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHcc //