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Lactobacillus salivarius UCC118 (lsal0)
Gene : rpsF
DDBJ      :rpsF         SSU ribosomal protein S6P
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  391/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.58.14
:96 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->93 2j5aA PDBj 1e-11 30.0 %
:RPS:PDB   1->96 2bxjA PDBj 2e-25 25.3 %
:RPS:SCOP  1->96 1cqmA  d.58.14.1 * 2e-25 26.3 %
:HMM:SCOP  1->96 1cqmA_ d.58.14.1 * 3.7e-27 36.8 %
:RPS:PFM   3->93 PF01250 * Ribosomal_S6 2e-16 40.0 %
:HMM:PFM   3->93 PF01250 * Ribosomal_S6 1.1e-32 38.9 90/92  
:BLT:SWISS 2->96 RS6_LACBA 3e-39 73.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD98830.1 GT:GENE rpsF GT:PRODUCT SSU ribosomal protein S6P GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 9217..9507 GB:FROM 9217 GB:TO 9507 GB:DIRECTION + GB:GENE rpsF GB:PRODUCT SSU ribosomal protein S6P GB:NOTE COG0360 [J] Ribosomal protein S6 GB:PROTEIN_ID ABD98830.1 GB:DB_XREF GI:90820191 GB:GENE:GENE rpsF LENGTH 96 SQ:AASEQ MTNYEITYIISPAIDEAAKTALVERFDNILKNDGAEIVDSKDWSKRRFAYEIGGFSEGIYHIVNIKAENADAINEFDRLAKINDGILRHMIVKRED GT:EXON 1|1-96:0| BL:SWS:NREP 1 BL:SWS:REP 2->96|RS6_LACBA|3e-39|73.7|95/98| BL:PDB:NREP 1 BL:PDB:REP 4->93|2j5aA|1e-11|30.0|90/106| RP:PDB:NREP 1 RP:PDB:REP 1->96|2bxjA|2e-25|25.3|95/98| RP:PFM:NREP 1 RP:PFM:REP 3->93|PF01250|2e-16|40.0|90/92|Ribosomal_S6| HM:PFM:NREP 1 HM:PFM:REP 3->93|PF01250|1.1e-32|38.9|90/92|Ribosomal_S6| GO:PFM:NREP 4 GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF01250|IPR000529| GO:PFM GO:0005840|"GO:ribosome"|PF01250|IPR000529| GO:PFM GO:0006412|"GO:translation"|PF01250|IPR000529| GO:PFM GO:0019843|"GO:rRNA binding"|PF01250|IPR000529| RP:SCP:NREP 1 RP:SCP:REP 1->96|1cqmA|2e-25|26.3|95/98|d.58.14.1| HM:SCP:REP 1->96|1cqmA_|3.7e-27|36.8|95/0|d.58.14.1|1/1|Ribosomal protein S6| OP:NHOMO 392 OP:NHOMOORG 392 OP:PATTERN -------------------------------------------------------------------- ---1111----11-11111-111111111111111111111---11111111111111--111111111111111111111111-111---1-111----11--1--1--------------------------------------1--1------------1-1-1--1-----1-1-------------111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111-11111111111111111--1-----------------------------------------------------------------11----------------------------------------------------------------1111111111111111111111111-1-111111--1111---11---11-1-1-------111111---------------------------------------1111-----------11-11---11--1---------------1-----1---1111---------------------------------------------------------------------------------------------111111111-1--1------------1-----------11111111111111111111---------11--111111-1-11-1111111111111-----------------------------1--------1-------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 96 STR:RPRED 100.0 SQ:SECSTR cEEEEEEEEEcTTccHHHHHHHHHHHHHHHHTTTcEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEccHHHHHHHHHHHHTcTTEEEEEEEEccc DISOP:02AL 95-97| PSIPRED ccccEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccccEEcccccEEEEEEEEEEcccHHHHHHHHHHHcccHHHEEEEEEEccc //