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Lactobacillus salivarius UCC118 (lsal0)
Gene : sbcD
DDBJ      :sbcD         Exonuclease
Swiss-Prot:             

Homologs  Archaea  16/68 : Bacteria  366/915 : Eukaryota  1/199 : Viruses  1/175   --->[See Alignment]
d.159.1
:371 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->231 1ii7B PDBj 3e-16 36.5 %
:RPS:PDB   1->337 3dsdA PDBj 6e-23 19.5 %
:RPS:SCOP  1->327 1ii7A  d.159.1.4 * 2e-19 20.2 %
:HMM:SCOP  1->315 1ii7A_ d.159.1.4 * 7.3e-51 26.9 %
:RPS:PFM   1->86 PF00149 * Metallophos 2e-06 38.2 %
:RPS:PFM   220->331 PF12320 * SbcD_C 9e-16 34.8 %
:HMM:PFM   221->334 PF12320 * SbcD_C 8e-24 31.8 110/132  
:HMM:PFM   1->212 PF00149 * Metallophos 5.3e-17 21.2 193/200  
:BLT:SWISS 1->365 SBCD_STAES 1e-64 34.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00175.1 GT:GENE sbcD GT:PRODUCT Exonuclease GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1438935..1440050) GB:FROM 1438935 GB:TO 1440050 GB:DIRECTION - GB:GENE sbcD GB:PRODUCT Exonuclease GB:NOTE COG0420 [L] DNA repair exonuclease GB:PROTEIN_ID ABE00175.1 GB:DB_XREF GI:90821536 GB:GENE:GENE sbcD LENGTH 371 SQ:AASEQ MKFLHTADWHIGKKLHNFDLKYEEDDAFKQIERIAEEEKVDAIIIAGDLYDRSLPSEEAVKSVNEKLKRLNLVDKHPLLIISGNHDSATRLNTGSEWFKATNLFLNTKISGAFEPVEIEETQFFLLPYFEPQEVRNYFDRQDLKNVQETMQLIVEKIKEKFKPNMKHVLVAHFFAAGSTQTDSETNVMVGGLDAIPTSYLNDFDYVALGHLHDARASQAEIIKYSGSPVKFSVSEATSQKGVWIVDTEKISPKFVPLVPVHEINVLEDSFDNLISPSVYEKYSKEDYYAIRLTDTKVIPDVINKLRNYYPKILELRRVGEIQELKAEENKERDLTDPMKLVSDFFTEVTGEKLTSNQQKWVKNALKDVNKK GT:EXON 1|1-371:0| BL:SWS:NREP 1 BL:SWS:REP 1->365|SBCD_STAES|1e-64|34.4|363/374| BL:PDB:NREP 1 BL:PDB:REP 1->231|1ii7B|3e-16|36.5|197/332| RP:PDB:NREP 1 RP:PDB:REP 1->337|3dsdA|6e-23|19.5|323/333| RP:PFM:NREP 2 RP:PFM:REP 1->86|PF00149|2e-06|38.2|76/193|Metallophos| RP:PFM:REP 220->331|PF12320|9e-16|34.8|112/127|SbcD_C| HM:PFM:NREP 2 HM:PFM:REP 221->334|PF12320|8e-24|31.8|110/132|SbcD_C| HM:PFM:REP 1->212|PF00149|5.3e-17|21.2|193/200|Metallophos| GO:PFM:NREP 1 GO:PFM GO:0016787|"GO:hydrolase activity"|PF00149|IPR004843| RP:SCP:NREP 1 RP:SCP:REP 1->327|1ii7A|2e-19|20.2|317/333|d.159.1.4| HM:SCP:REP 1->315|1ii7A_|7.3e-51|26.9|297/333|d.159.1.4|1/1|Metallo-dependent phosphatases| OP:NHOMO 403 OP:NHOMOORG 384 OP:PATTERN -------1-----1-1-------1---------1---------1--111----1111--11--1---- ------------------------------------1111-111--1--11-11111---111-111111---------1-1-111111111-1------1----1-11----------------11-1111--11-----111----11----------1-------1-1-1-----1----11111---111222222221222222--111122211111111111111111111111111111-111111-1-11-111-111111-1----111-------------------------------------111----1111111111111111122111111-1-1--1-11---11---111111--1------------1----------------------11-11-1--------1----------1---------1----------------------------------------------------------------------------------1111----------1---------------------111111-1--1----------------1-1--1-1-11------------------------1--11111-1-1111111111111111111111---1--1------11111111111111111-1111111111111111111111111111111111111111111111-1111--1--------------------------111---------------1111111111--1111-11111-1-1111----------11111111111111------------------------1111111111--------------------------1-11-111-1--- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- -------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 354 STR:RPRED 95.4 SQ:SECSTR cEEEEEcccccTcGGGcHHHHHHHHHHHHHHHHHHHHTTccEEEEEccccccccccHHHHHHHHHHHHHHHHTTcccEEEEccTTTcccccccHHHHHHcEEcEEEccccccTTEEEEEcTTccEEEEEEETTEEEEEEccccHHHHHHcTTHHHHHccccccccEEEEEEEccccccccHHHHHTTTcccccccGGGccTTccEEEEEcccEEEEETTEEEEEccccccccGGGccEEEEEccccEEEEEccccEEEEEETTEEEEEEcccccEEEEEEEEcHHHHHHHHHHHGGGccTcccccTcEEEEEEEEccccccHHHHHHccccEEEEEEEEEGGGcccccccEEEE################# DISOP:02AL 320-338,369-372| PSIPRED cEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHcccEEcEEEccccEEEEEccEEEEEEccccHHHHHHHccccccccHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccccccccccHHHHHHHccccccEEEEccEEEEEEEcccEEEEccccccccHHHccccccEEEEEEccccEEEEEEcccccEEEEEEcHHHHHcHHHHHHcccccEEEEEEccccccHHHHHHHHHHcHHHEEEEEcccccccHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcc //