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Lactobacillus salivarius UCC118 (lsal0)
Gene : srmB.1
DDBJ      :srmB         Superfamily II DNA and RNA helicase
Swiss-Prot:             

Homologs  Archaea  38/68 : Bacteria  185/915 : Eukaryota  16/199 : Viruses  0/175   --->[See Alignment]
a.7.10c.37.1c.47.1c.52.1
:788 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   194->756 3crvA PDBj 2e-21 24.6 %
:RPS:PDB   196->234,592->763 3crw1 PDBj 9e-11 21.6 %
:RPS:PDB   205->481 1c4oA PDBj 3e-06 13.6 %
:RPS:SCOP  51->123 1w36B3  c.52.1.24 * 3e-04 12.5 %
:RPS:SCOP  185->230 1oywA2  c.37.1.19 * 8e-05 33.3 %
:RPS:SCOP  208->327 1a1vA1  c.37.1.14 * 2e-06 10.1 %
:RPS:SCOP  345->413 2dlxA1  c.47.1.24 * 3e-04 10.1 %
:RPS:SCOP  608->658 1rrzA  a.7.10.1 * 1e-10 15.7 %
:HMM:SCOP  38->349 1w36D1 c.37.1.19 * 5.7e-08 18.6 %
:HMM:SCOP  201->757 2bmfA2 c.37.1.14 * 7.3e-18 21.2 %
:RPS:PFM   298->396 PF06733 * DEAD_2 1e-09 32.7 %
:HMM:PFM   309->398 PF06733 * DEAD_2 1.6e-15 24.7 89/173  
:HMM:PFM   201->245 PF02562 * PhoH 5.1e-06 31.1 45/205  
:HMM:PFM   394->422 PF04614 * Pex19 0.00034 31.0 29/249  
:BLT:SWISS 72->197 HFLK_BUCAI 6e-04 29.0 %
:BLT:SWISS 194->756 XPD_SULAC 7e-21 24.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99162.1 GT:GENE srmB.1 GT:PRODUCT Superfamily II DNA and RNA helicase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(379190..381556) GB:FROM 379190 GB:TO 381556 GB:DIRECTION - GB:GENE srmB GB:PRODUCT Superfamily II DNA and RNA helicase GB:NOTE COG1199 [KL] Rad3-related DNA helicases GB:PROTEIN_ID ABD99162.1 GB:DB_XREF GI:90820523 GB:GENE:GENE srmB LENGTH 788 SQ:AASEQ MSTSIGVRKLVEFILKKGNLTSNTNSQNTALDGISIHQRLQKKFSNDTKSEIALKKELDIDGETWIIHGRADGIKYIDDRPQQVIEIKTSSPEFSELAPNTLELYWAQAKIYAHIIMEQEQLPELSLKLIYVQTTDNTISEETQVISQTDAQNFFDNIIAEFTNWIKLQHQLQKERDHSINKLDFPFSSYRKNQHEFAAAVYKTIALNKKLLVEAPTGTGKTISTIFPAVKALGTKKCQKIFYLTAKQSTRKVAEETLQLLVKHGLSITAITLTSKEQITFPEELDLADDENPYYLGYYDRLRPALIDILTNEKVITRKIVENYAKKHMLDPFEFSLDISNSCDVVICDYNYLFDPLVKLQRFFTERNYDYTFLLDEAHNLVSRSRDMYTKEISSQQIKDLLDKLQTLPHPPQKIVDKLNTLLNDFDLIKEPLVNYQQADVIIEEKLASLTKKIMYFCDFTTDWLAENPHFSLKDDLLEFFFAAYAFVKISDYYNNSFRTHLFITENSELLIRVFCLDFSELIANSLNLGGSAVLFSATLSPLNYYQEMFGLIDNSLLYQLSSPFDESNLNLLITSYIPVTYQQRQQSLGKIIDAIHTMIATKQGNYLIFLPSYTFLKQVVVAFNQAYPHIDTVIQENDMTREQQEDFLNYFVENPTKILVGFAVLGGSFSEGIDLKGNRLSGVAIVSVGLPKLSKETNELQSYFNNKQKDGFQYAYQLPGLNNIFQAAGRVIRSSTDVGVVLLIDNRFATSRYAKFFPPHWKYAQIIHNQYELEQNLSTFWNKNKDS GT:EXON 1|1-788:0| BL:SWS:NREP 2 BL:SWS:REP 72->197|HFLK_BUCAI|6e-04|29.0|124/100| BL:SWS:REP 194->756|XPD_SULAC|7e-21|24.6|516/551| BL:PDB:NREP 1 BL:PDB:REP 194->756|3crvA|2e-21|24.6|516/551| RP:PDB:NREP 2 RP:PDB:REP 196->234,592->763|3crw1|9e-11|21.6|201/485| RP:PDB:REP 205->481|1c4oA|3e-06|13.6|242/504| RP:PFM:NREP 1 RP:PFM:REP 298->396|PF06733|1e-09|32.7|98/151|DEAD_2| HM:PFM:NREP 3 HM:PFM:REP 309->398|PF06733|1.6e-15|24.7|89/173|DEAD_2| HM:PFM:REP 201->245|PF02562|5.1e-06|31.1|45/205|PhoH| HM:PFM:REP 394->422|PF04614|0.00034|31.0|29/249|Pex19| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF06733|IPR010614| GO:PFM GO:0004003|"GO:ATP-dependent DNA helicase activity"|PF06733|IPR010614| GO:PFM GO:0005524|"GO:ATP binding"|PF06733|IPR010614| RP:SCP:NREP 5 RP:SCP:REP 51->123|1w36B3|3e-04|12.5|72/276|c.52.1.24| RP:SCP:REP 185->230|1oywA2|8e-05|33.3|42/206|c.37.1.19| RP:SCP:REP 208->327|1a1vA1|2e-06|10.1|119/136|c.37.1.14| RP:SCP:REP 345->413|2dlxA1|3e-04|10.1|69/147|c.47.1.24| RP:SCP:REP 608->658|1rrzA|1e-10|15.7|51/66|a.7.10.1| HM:SCP:REP 38->349|1w36D1|5.7e-08|18.6|188/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 201->757|2bmfA2|7.3e-18|21.2|302/0|c.37.1.14|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 258 OP:NHOMOORG 239 OP:PATTERN ---1---1--------11---1--12221122------111111111111111-1111111-111--- ------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------11111-111111111-1--1-111----11-211111-21-------------------1-1-11-----11--11-11---------------------------------------------------11111111111-1-1---11111-111-11--221---11-1-----11--1---------------------------------------------------------------------------------------------------------------------------------11111111-1-11111111-1111111------11111111-1--1----1---------11----1--------------111---1-1--------------------------------------11-2-112----1-1-111--1-1-----------------1-1--------------------------------------111-----------------------------------------------------11-111--11111-----------------11111111111111111---------1122-------12211111111111-----1----1111----------------------------------------------11- ----1-------11-11--------------------------------------------------1-----1--------1---------1------1------1----------------------------------------------------------3------1-1----------1--1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 575 STR:RPRED 73.0 SQ:SECSTR ##########################################################################################################################################################################################ccGGcHHHHcHHHHHHHHHHTTcEEEEEccccccHHHHHHHHHTTTccHHHTccEEEEEccHHHHHHHHHHHHHcTTcEEEEcccGTccccEEcTTEGGTEEEcccccccTTcccHHHHcccccHHHHHHHccHHHHHHHHHHHHTccHHHHHHHHcEEEEEEGGGcccHccHHHHHHcccccTEEcccccccccccccHHHHHHHHEHHHHHHHHHHHHHTTcHHcHHHHHHHHHHHHHHHHHHcccTTGGGGHHHHHTccTTcccccGGGGccTTcEEEEETHHHHHHHHHHHHHHHHHHHHcccEEEEETTEEEEcEcccTHHHHGGGGcTTcH##GGGGGcEEEEEEcccccHHHHHHTccccccEEEEEHHHHTTccEEEEEEEccccccTTTccHHHHHHHHHHHHHHHTcccEEEEEEccHHHHHHHHTTcHHTTccccEEEccccccHHHHHTTccccccccEEEEEEEEEcccccccccccccccccEEEEEEEccccccccHHHHHHTTcccccTTHHHHTHHHHHHHHHHHHHTTccccccccEEEEEcGGGGcHHHHHHTTcccE######################### DISOP:02AL 1-1,43-46,470-471,473-473,640-642,785-789| PSIPRED ccEEEEHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccEEEEEEEEEEccEEEEEEEcccEEEEEccccEEEEEEEcccccHHHcccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccEEEEEHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHccHHHHHcccccHHHcccHHHHHHHHHHHHcccccccHHHHHHHcHHccccHHHHHHHHHHHccEEEEcHHHHccHHHHHHccccccccccEEEEEccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccEEEEEEEccHHHHHHHHHHHccEEEEEEEEcccHHHHHHHcccccccEEEEEcccccHHHcEEEEEccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHcccccEEEEEEccccEEccccccccccccEEEEEcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHcccccEEEEEEEEcccccHHHHHHccHHccccEEEccHHHHHHHHHHHHHHcccc //