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Lactobacillus salivarius UCC118 (lsal0)
Gene : srmB.2
DDBJ      :srmB         ATP-dependent RNA helicase
Swiss-Prot:             

Homologs  Archaea  60/68 : Bacteria  828/915 : Eukaryota  198/199 : Viruses  1/175   --->[See Alignment]
c.37.1
:492 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->366 2j0sA PDBj 4e-71 36.9 %
:RPS:PDB   1->412 1cu1A PDBj 2e-72 9.6 %
:RPS:SCOP  13->346 1pjrA1  c.37.1.19 * 2e-56 10.6 %
:HMM:SCOP  68->358 1wp9A2 c.37.1.19 * 6.9e-76 36.8 %
:RPS:PFM   25->187 PF00270 * DEAD 1e-38 49.4 %
:RPS:PFM   264->334 PF00271 * Helicase_C 1e-18 52.1 %
:HMM:PFM   25->191 PF00270 * DEAD 2.8e-56 48.5 165/167  
:HMM:PFM   260->335 PF00271 * Helicase_C 4.4e-31 47.4 76/78  
:BLT:SWISS 3->440 CSHA_GEOKA e-150 59.2 %
:PROS 149->157|PS00039|DEAD_ATP_HELICASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99169.1 GT:GENE srmB.2 GT:PRODUCT ATP-dependent RNA helicase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 389363..390841 GB:FROM 389363 GB:TO 390841 GB:DIRECTION + GB:GENE srmB GB:PRODUCT ATP-dependent RNA helicase GB:NOTE COG0513 [LKJ] Superfamily II DNA and RNA helicases GB:PROTEIN_ID ABD99169.1 GB:DB_XREF GI:90820530 GB:GENE:GENE srmB LENGTH 492 SQ:AASEQ MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKKRMDPLKPPTQDEAFIGQVSSALDDIKDLIADTDTERYEAQAQALLEQYDAVEVVAAFLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGNYRRGNDNFKRSKRFNKHDRKNRDNKRRSGKKNRFTIRTKKA GT:EXON 1|1-492:0| BL:SWS:NREP 1 BL:SWS:REP 3->440|CSHA_GEOKA|e-150|59.2|436/467| PROS 149->157|PS00039|DEAD_ATP_HELICASE|PDOC00039| SEG 60->71|lqqldldlrqiq| SEG 442->456|rrkkgrrngnyrrgn| SEG 463->484|krfnkhdrknrdnkrrsgkknr| BL:PDB:NREP 1 BL:PDB:REP 3->366|2j0sA|4e-71|36.9|363/391| RP:PDB:NREP 1 RP:PDB:REP 1->412|1cu1A|2e-72|9.6|374/645| RP:PFM:NREP 2 RP:PFM:REP 25->187|PF00270|1e-38|49.4|162/167|DEAD| RP:PFM:REP 264->334|PF00271|1e-18|52.1|71/76|Helicase_C| HM:PFM:NREP 2 HM:PFM:REP 25->191|PF00270|2.8e-56|48.5|165/167|DEAD| HM:PFM:REP 260->335|PF00271|4.4e-31|47.4|76/78|Helicase_C| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 1 RP:SCP:REP 13->346|1pjrA1|2e-56|10.6|312/315|c.37.1.19| HM:SCP:REP 68->358|1wp9A2|6.9e-76|36.8|269/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 11008 OP:NHOMOORG 1087 OP:PATTERN ---2-1343333334422121213111111-11112211111133232-43341-1122222121-23 1221333333332332322-23113422222233333555-32333532444434323--4432333564211112221131-11111666726443--7286748BA18--------------23212333232312211111113112111----23133121-3323312111111111151211--1135666667566666776436655666322535466666676444444444444444444445344444444455333343344222233333333333333333323333333333333333333333333-634866666667673522544455-2-122117645-1121--1---215-6323322212333333223333333333333333-3333333323223333333333334324444244344425555555536653323------------111111111111111111333324444355555556666446565654555544552344454544576654555543553222222242245674825253214333-555535565555585524--1-------1111111116111533AB8856D7AABBEEEEEEEEEEECEEDEDD1-2222411111165666666666666666-66666666666566666666666655666666666666565566665666651655667755667114522222444427459434444344344444222222222257786769888777697673222222226CCCCAAAAA9DDCC44666666663333233-333333--------21322232---1--12---11121-11112111------34 UTOOXUR5*TPLTSVNPPNOOOOPPOPOOPOOONNNPQOOOOOONOPQPPQQRSOPOSOQQQONPMOOHPQONPOOPKPQOOMNOMMN-MdSPPSTSOQNQOScecCV*X*jvjphyYVYSWdVvqU*V**m3wi*RZZTnYaiUSacVUdTNyWjbUac*vhbYTXlYg*iljTMbaj*gedTbwl**P*wZXeXbZd --------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---- STR:NPRED 436 STR:RPRED 88.6 SQ:SECSTR EETTEEEEEEEEEHHHHHHHHHccccccccccccccccEEEEEEccccccTTTHHHHHHHTTTccTcccccEEEEEccHHHHHHHHHHHHHHTccTTccEEEcccccEEEccccccccccccEEEEEHHHHHHHTcccTTcccEEEEETTTcccHHHHHHHHHHHHHTTTTTccEEEEEEcccTTccccccTTEEEEEcccEEccccccccTTcEEEEEEcccccEEETTEEEcGGGTcccEEEEEccccHHHHHHHHHHHHTTccEEEEcTTcccccccccccEEEEEcTTHHHHccccccEEEEccEEEEEEEEcccEEEEEEEEccHHHHHHHHTTccccccEEEEEccccccccccccHHHHHHHHHHHHHTccccHHHHHHHHHHHHHcTTccccccHHHHHHHHHTHHHHHHHHHHGTcccccEEEccHH######################################################## DISOP:02AL 372-404,420-457,461-485,490-493| PSIPRED ccHHHccccHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHccccHHEEEEEEEcccHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHcccccEEEcccHHHHHHHHcccccccccEEEEEEccHHHcccccHHHHHHHHHHccHHHcEEEEEccccHHHHHHHHHHccccEEEEEccccccccccEEEEEEEcHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccccEEEEccHHHcccccccccEEEEccccccHHHHccccccccccccccEEEEEEcHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHcccccEEEEEEccc //