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Lactobacillus salivarius UCC118 (lsal0)
Gene : srmB.3
DDBJ      :srmB         ATP-dependent RNA helicase
Swiss-Prot:             

Homologs  Archaea  58/68 : Bacteria  827/915 : Eukaryota  198/199 : Viruses  1/175   --->[See Alignment]
c.37.1
:440 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->359 1xtkA PDBj 9e-55 31.5 %
:RPS:PDB   1->341 1cu1A PDBj 1e-59 11.0 %
:RPS:SCOP  3->207 1fuuA  c.37.1.19 * 8e-42 32.8 %
:RPS:SCOP  218->358 1t5iA  c.37.1.19 * 1e-21 29.8 %
:HMM:SCOP  69->361 1wp9A2 c.37.1.19 * 3.7e-65 33.9 %
:RPS:PFM   28->192 PF00270 * DEAD 2e-31 46.3 %
:RPS:PFM   263->336 PF00271 * Helicase_C 4e-12 36.5 %
:HMM:PFM   26->191 PF00270 * DEAD 1.3e-46 38.9 162/167  
:HMM:PFM   262->338 PF00271 * Helicase_C 6.6e-24 37.7 77/78  
:BLT:SWISS 4->374 CSHB_BACSU e-113 52.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99920.1 GT:GENE srmB.3 GT:PRODUCT ATP-dependent RNA helicase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1139922..1141244) GB:FROM 1139922 GB:TO 1141244 GB:DIRECTION - GB:GENE srmB GB:PRODUCT ATP-dependent RNA helicase GB:NOTE COG0513 [LKJ] Superfamily II DNA and RNA helicases GB:PROTEIN_ID ABD99920.1 GB:DB_XREF GI:90821281 GB:GENE:GENE srmB LENGTH 440 SQ:AASEQ MANFREFNFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQNLNAQKDEVQAVITTPSRELAYQIYEAAKQLAKFSPENIWIQNYVGGTDKQRQIEKLKSHQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDLQMLVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLISTKGRDRNKLIYDLLTMGEPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQFVVATDLAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEKLIDELESMGVHFVPKAVKNGEIVDSYDRNRREKRQTRKESMDPKLRGFVKKEKKKRKPGYKKKIKQAIKRDEQQKRRIARRQARKMK GT:EXON 1|1-440:0| BL:SWS:NREP 1 BL:SWS:REP 4->374|CSHB_BACSU|e-113|52.2|370/438| SEG 403->418|kkekkkrkpgykkkik| SEG 426->438|qqkrriarrqark| BL:PDB:NREP 1 BL:PDB:REP 4->359|1xtkA|9e-55|31.5|355/382| RP:PDB:NREP 1 RP:PDB:REP 1->341|1cu1A|1e-59|11.0|301/645| RP:PFM:NREP 2 RP:PFM:REP 28->192|PF00270|2e-31|46.3|162/167|DEAD| RP:PFM:REP 263->336|PF00271|4e-12|36.5|74/76|Helicase_C| HM:PFM:NREP 2 HM:PFM:REP 26->191|PF00270|1.3e-46|38.9|162/167|DEAD| HM:PFM:REP 262->338|PF00271|6.6e-24|37.7|77/78|Helicase_C| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 2 RP:SCP:REP 3->207|1fuuA|8e-42|32.8|201/215|c.37.1.19| RP:SCP:REP 218->358|1t5iA|1e-21|29.8|141/159|c.37.1.19| HM:SCP:REP 69->361|1wp9A2|3.7e-65|33.9|271/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 10783 OP:NHOMOORG 1084 OP:PATTERN 1112-22222222222221211-21--1--112112322111112222-22231--121122231-23 1111333333332332322-23113422222233334555-42333432554444323--4432333575212222221131-11111776625332--6267649A928--------------232133222223111111112122-2112-1--23223121-2223211111111111151211--1125777777776777777536655777422546465655665333343343333333433445454554444455445544444233333333333333333333323333333333333333333333333-624866666667673633555535-2-132115435-1111------215-4434322212433333223433333333333333-3333333324223333333333333334444354455435555555535563323------------111111111111111111333324444355555554444445544443455544452444454544565654554343353222222332244574725253214333-454535655444484524--1-------1111111115111522AA8746E79BBBEEEEEEDDDDECEECECC1-2222311111165666666666666666-66666666666566666666666655666666666666565566665666651655667755667114622222444437458434444344344444222222222256786777777666667683222222225CCCBAAAAA9CDCC44555555553333232-444433--------21322232---1--12---11121-11122121------35 STNNVUP5*ROKRPVPPPOPPPPQPPPOOPOOONNOOQNOMOOPNOQPPPPPQRNPOPOPOOPPPOPOHPROPOPPQLRRPPNPOOMO-MdRPPRSSOQNQNQcdcBU*T*jthofwXVXOWbUtpR*T**l3vj*RZXQlSYgUOaaTScTLvVhWTaZ*wgaWTTkZh*gkgRNaYi*gfaSavj**Q*sYXeXZab --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- STR:NPRED 401 STR:RPRED 91.1 SQ:SECSTR EEETTEEEEEEEEEHHHHHHHHHccccccccccccccccEEEEEEccccccTTTHHHHHHHTTTTccccTccEEEEEccHHHHHHHHHHHHHHTccccEcccEEEccTTccEEccccccccccccEEEEEHHHHHHHTcccTTcccEEEEETTTcccHHHHHHHHHHHHHTTTTTccEEEEEEcccTTccccccTTEEEEEcccccccccccccEEcccEEEccHHHHEEETTEEEcGGGTcccEEEEEccccHHHHHHHHHHHHTTccEEEEcTTcccccccccccEEEEEcTTHHHHccccccEEEEccEEEEEEEEcccEEEEEEEEccHHHHHHHHTEEEEEEEHHHHccHHHHHccccTTHHHTTcccHHHHHHHHccGGGHHHTTcHHHEEcccH####################################### DISOP:02AL 372-433,435-441| PSIPRED cccHHHccccHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHccccEEEcccHHHHHHHHcccccccccEEEEEEccHHHcccccHHHHHHHHHHccHHHcEEEEEccccHHHHHHHHHHccccEEEEEccccccccccEEEEEEEcHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccccEEEEccHHHcccccccccEEEEccccccHHHHccccccccccccccEEEEEEcHHHHHHHHHHHHHHcccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccc //