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Lactobacillus salivarius UCC118 (lsal0)
Gene : srmB.4
DDBJ      :srmB         ATP-dependent RNA helicase
Swiss-Prot:             

Homologs  Archaea  60/68 : Bacteria  826/915 : Eukaryota  198/199 : Viruses  1/175   --->[See Alignment]
c.37.1
:426 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->339 1s2mA PDBj 4e-41 30.7 %
:RPS:PDB   1->342 3bxzB PDBj 1e-41 12.1 %
:RPS:SCOP  7->332 1pjrA1  c.37.1.19 * 2e-28 8.7 %
:HMM:SCOP  24->343 2bmfA2 c.37.1.14 * 5.1e-57 35.5 %
:RPS:PFM   20->176 PF00270 * DEAD 6e-25 39.1 %
:RPS:PFM   251->324 PF00271 * Helicase_C 2e-13 41.9 %
:HMM:PFM   19->176 PF00270 * DEAD 1.1e-43 36.5 156/167  
:HMM:PFM   250->326 PF00271 * Helicase_C 1.6e-24 41.6 77/78  
:BLT:SWISS 6->364 YFML_BACSU 4e-60 34.2 %
:PROS 140->148|PS00039|DEAD_ATP_HELICASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00093.1 GT:GENE srmB.4 GT:PRODUCT ATP-dependent RNA helicase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1326739..1328019) GB:FROM 1326739 GB:TO 1328019 GB:DIRECTION - GB:GENE srmB GB:PRODUCT ATP-dependent RNA helicase GB:NOTE COG0513 [LKJ] Superfamily II DNA and RNA helicases GB:PROTEIN_ID ABE00093.1 GB:DB_XREF GI:90821454 GB:GENE:GENE srmB LENGTH 426 SQ:AASEQ MNPKFEEQFRQEGFTEPTLIQKYVYPKLAEGKNVVGLAPTGSGKTLAYSLPLLEKILPKDGSQLLIMAPSQELAAQLTNTIRPWAKLLDLSVIGLLGGANVKRQIEKLKKHPEVVIGTPGRLLNLINLKKLKLHKIESIVIDEADEMLGDEDSLNDVREIVSHCPSEAQISFFSATEAPILSELHRWFGVDVEKIDVRKEDNTRGEVTNYMIEAPTRKRTEMLRRLGHVDDFYALVFFKQTATLRDVAEKLLHMKVPVAILSSEQRQVDRQKSLRQLRKREIRFVLTTDVAARGLDLPDLPAVVNYDLPKDTNTYIHRAGRTGRMGADGIVVNLGNEHDLRLFKQLMSGTDFVIEKGILYAGKLIPESEKALIVVEDERPNKKATKKKIKDKKPTRKEEKATEKKKKKRKRNLKNKGKRHGRKKDK GT:EXON 1|1-426:0| BL:SWS:NREP 1 BL:SWS:REP 6->364|YFML_BACSU|4e-60|34.2|357/376| PROS 140->148|PS00039|DEAD_ATP_HELICASE|PDOC00039| SEG 122->136|llnlinlkklklhki| SEG 379->425|rpnkkatkkkikdkkptrkeekatekkkkkrkrnlknkgkrhgrkkd| BL:PDB:NREP 1 BL:PDB:REP 11->339|1s2mA|4e-41|30.7|322/377| RP:PDB:NREP 1 RP:PDB:REP 1->342|3bxzB|1e-41|12.1|339/440| RP:PFM:NREP 2 RP:PFM:REP 20->176|PF00270|6e-25|39.1|156/167|DEAD| RP:PFM:REP 251->324|PF00271|2e-13|41.9|74/76|Helicase_C| HM:PFM:NREP 2 HM:PFM:REP 19->176|PF00270|1.1e-43|36.5|156/167|DEAD| HM:PFM:REP 250->326|PF00271|1.6e-24|41.6|77/78|Helicase_C| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 1 RP:SCP:REP 7->332|1pjrA1|2e-28|8.7|299/315|c.37.1.19| HM:SCP:REP 24->343|2bmfA2|5.1e-57|35.5|276/0|c.37.1.14|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 9761 OP:NHOMOORG 1085 OP:PATTERN ---2-22233332331-3122212-11-1111111111111111112213223111111122111-12 1111333333332332322-23113322222233333555-32333432444333323--4432333564211111111131-11111444413221--51554279716--------------222122222212111112211121-1111----12122111-2222111111111111131111--1124666666665666566434454666222325444444454222222222222222322223333333333333333333333222233333333333333333323333333333333333333333333-523655555555553422433334-1-121113434-1111------113-3323322212333333223333333333333333-3333333323223333333333333323333233333324444444435553323------------111111111111111111333324444355555554444445544443455544452344454544565554553343353222222222244573625253214333-444534544333364424--1-------1111111115111522997646B6899ACCCCCCCCCCCBCCBCBB1-2222311111154555555555555555-55555555555555555555555544555555555555454455554555541544556644556114511111333325448323333233333333222222222256666666666666666663222222225AAAA999998BBAA44555555553333232-332222--------11322232---1--11---11121-11111111------34 NOKMTSO5*PLKQOTLLNJLNNMNOMNMNMNMNMLKLOLMJMLNKLNOMMOMOOKMNNNNNNOMNLNNGMNKMMNNOKOPNNLNMMMM-LVNLMMOQMNMMKPZbbBQzRwhtejfrTQMJTbStmQ*T**l3th*OSSOiOWhSNaWRQcPIvTfVSXX*tfYSRPgWd*ficRIYZg*dcXRXuk**OzoUUbVYYa --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- STR:NPRED 377 STR:RPRED 88.5 SQ:SECSTR HHHHHHHHHHHHHHTcccccHHHHHHHHHTTTTEEEEccTTccHHHHTHHHHHHHTcTTccccEEEEEccHHHHHHHHHTTHHHHHHTTccEEEccTTccHHHHHHHHHccEEEEEHHHHHHHHHHHHTcccGGGcccHHHHHTTcccHccEEccEEccTTTGGGcccEEEEEEccccTTccHHHHHcccEEEEcccccccccEEcccEEccHHHHHHHHHHHHHHHHHHTccEEEEcccHHHHHHHHHHHHHTcccccEEccccHHHHHHHHTTTTccccEEEEcTTccTTccccTTccTHEEEccccccTTHHHHHHHTccGGGcccEEEEEEEHHHHccHHHHHcHHHHHHHHHHHHTTccccGHHHHHHcccc################################################# DISOP:02AL 375-427| PSIPRED ccHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHccccEEEccccHHHHHHcHHHEEEEEEEEEEEEccHHHHHHcccHHHHHHHHHHccHHHcEEEEEccccHHHHHHHHHHccccEEEEEccccccccccEEEEEEEcHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHcccccEEEEccHHHcccccccccEEEEEcccccHHHHccccccccccccccEEEEEEcHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccc //