[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Lactobacillus salivarius UCC118 (lsal0)
Gene : ssb
DDBJ      :ssb          Single-strand DNA binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  836/915 : Eukaryota  7/199 : Viruses  19/175   --->[See Alignment]
b.40.4
:183 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->95 1x3eB PDBj 2e-18 51.7 %
:RPS:PDB   1->116 2cczA PDBj 2e-32 20.5 %
:RPS:SCOP  2->110 1ue1A  b.40.4.3 * 4e-34 38.9 %
:HMM:SCOP  1->183 1se8A_ b.40.4.3 * 8.1e-54 42.5 %
:RPS:PFM   2->103 PF00436 * SSB 4e-30 57.8 %
:HMM:PFM   2->102 PF00436 * SSB 8.1e-40 51.5 101/104  
:BLT:SWISS 1->112 SSB_LACPL 3e-48 79.5 %
:REPEAT 2|119->144|146->170

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD98831.1 GT:GENE ssb GT:PRODUCT Single-strand DNA binding protein GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 9548..10099 GB:FROM 9548 GB:TO 10099 GB:DIRECTION + GB:GENE ssb GB:PRODUCT Single-strand DNA binding protein GB:NOTE COG0629 [L] Single-stranded DNA-binding protein GB:PROTEIN_ID ABD98831.1 GB:DB_XREF GI:90820192 GB:GENE:GENE ssb LENGTH 183 SQ:AASEQ MINRAILVGRLTRDPDLRYTASGAAVATFTVAVNRQFTNQQGEREADFINCVMWRKPAENFANFTHKGSLVGIDGRIQTRSYENQQGTRVYVTEVVAENFSLLESRAEADRYREQHGMTQNNYGNNAPSQNQASQFDSNPFGDSQSNNSFGGNTPANNGADNSADPFADNGQSIDISDDDLPF GT:EXON 1|1-183:0| BL:SWS:NREP 1 BL:SWS:REP 1->112|SSB_LACPL|3e-48|79.5|112/200| NREPEAT 1 REPEAT 2|119->144|146->170| BL:PDB:NREP 1 BL:PDB:REP 7->95|1x3eB|2e-18|51.7|89/119| RP:PDB:NREP 1 RP:PDB:REP 1->116|2cczA|2e-32|20.5|112/121| RP:PFM:NREP 1 RP:PFM:REP 2->103|PF00436|4e-30|57.8|102/104|SSB| HM:PFM:NREP 1 HM:PFM:REP 2->102|PF00436|8.1e-40|51.5|101/104|SSB| GO:PFM:NREP 1 GO:PFM GO:0003697|"GO:single-stranded DNA binding"|PF00436|IPR000424| RP:SCP:NREP 1 RP:SCP:REP 2->110|1ue1A|4e-34|38.9|108/113|b.40.4.3| HM:SCP:REP 1->183|1se8A_|8.1e-54|42.5|174/0|b.40.4.3|1/1|Nucleic acid-binding proteins| OP:NHOMO 1225 OP:NHOMOORG 862 OP:PATTERN -------------------------------------------------------------------- 111111211121211-111-11111111111111111111111211111111222111111111112111111112212221111111121212111---1124211121---------------222222222222223211121111-11-111111111-1112111111111111111112-1111121222222222222222221331221222341114223321154333333245543232232611122121112111431111114334223232222222223232321443233322233222222222212232121224353222332232222241121121131111111121111211---1134141111211111111--11-111111-11111111-1-11--1111-------1-111112111--111111111111121----111111111--111--------1111---1-1111122111121111122111111111311222114311212112111211111111211111111111111211111111111111112121131111121111111--1-1-11111111111111331111111111111111111211111111111-2111111111111111111221121221-2112241111221221221311111122111211121222213311111111111111111111111-11111111111111-11112123112222111112211111111111111111211121111111111111111111111111111111111-4324111-11111111111-1111121A21-11122--111111-11111111-111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------1----2---------11-------------1----11---- -----------------------------1-----------1---1--------------1-----------------1---11----------1----------1-111------------1----11-----111----------------1--------------------- STR:NPRED 116 STR:RPRED 63.4 SQ:SECSTR ccccEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEccTTHHHHHTccTTcEEEEEEcEEcccccccccccEEEccEEccccEEcccHHHHHHHHHcc################################################################### DISOP:02AL 40-40,102-173| PSIPRED ccEEEEEEEEEccccEEEEcccccEEEEEEEEEcccccccccccccEEEEEEEEccHHHHHHHHcccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc //