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Lactobacillus salivarius UCC118 (lsal0)
Gene : ssl.2
DDBJ      :ssl          DNA/RNA helicase, DEAD/DEAH box family
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  329/915 : Eukaryota  84/199 : Viruses  13/175   --->[See Alignment]
c.37.1d.136.1
:951 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   164->243 2h84A PDBj 6e-05 30.4 %
:BLT:PDB   221->546 2fwrD PDBj 1e-12 28.5 %
:BLT:PDB   816->942 1x9yA PDBj 5e-04 32.5 %
:RPS:PDB   34->180 1byrA PDBj 3e-10 18.6 %
:RPS:PDB   235->375 3e0jC PDBj 2e-09 6.6 %
:RPS:PDB   443->623 3earA PDBj 6e-07 18.9 %
:RPS:SCOP  37->203 1xdoA4  d.136.1.4 * 3e-12 12.7 %
:RPS:SCOP  207->376 2fwrA2  c.37.1.19 * 5e-17 29.3 %
:RPS:SCOP  444->532 2eyqA5  c.37.1.19 * 1e-06 16.9 %
:HMM:SCOP  25->181 1byrA_ d.136.1.1 * 4.5e-09 19.3 %
:HMM:SCOP  157->401 1z3iX2 c.37.1.19 * 1.3e-41 24.5 %
:HMM:SCOP  311->549 1z3iX1 c.37.1.19 * 1.5e-32 22.7 %
:RPS:PFM   216->359 PF04851 * ResIII 3e-13 35.5 %
:RPS:PFM   674->950 PF11907 * DUF3427 3e-40 42.9 %
:HMM:PFM   672->948 PF11907 * DUF3427 7.8e-81 38.8 260/274  
:HMM:PFM   210->361 PF04851 * ResIII 2e-33 34.2 149/184  
:HMM:PFM   460->533 PF00271 * Helicase_C 6.5e-13 25.7 74/78  
:HMM:PFM   559->604 PF10245 * MRP-S22 6.9e-05 28.3 46/243  
:BLT:SWISS 164->243 PKS1_DICDI 2e-04 30.4 %
:BLT:SWISS 239->547 IRC3_YEAST 2e-21 26.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00257.1 GT:GENE ssl.2 GT:PRODUCT DNA/RNA helicase, DEAD/DEAH box family GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1511924..1514779) GB:FROM 1511924 GB:TO 1514779 GB:DIRECTION - GB:GENE ssl GB:PRODUCT DNA/RNA helicase, DEAD/DEAH box family GB:NOTE COG1061 [KL] DNA or RNA helicases of superfamily II GB:PROTEIN_ID ABE00257.1 GB:DB_XREF GI:90821618 GB:GENE:GENE ssl LENGTH 951 SQ:AASEQ MDNETLKEAMLNGLYAADYSGHELLTPKMLVNANDQHIWTSLKQELKTCKSFIWSVAFITLDMLTPLKVVLVDLDKKGIRGKIVTSTYLNFNQPKVFTELLKLKNVDVYLAEESDFHAKGYMFEHSDYYTMIVGSANFTRAAMLSNYEWAIKLTSTENGSLYQQTHSELERIIENSQVLTQAWIDNYKEVWQNLRITEKSTFNNKAKSEIVPNKMQMAALKELEKIVAEKKSKALVVSATGTGKTYLGAFAVKEYQPKRFLFVVHREQIAKKAMESFKKVIGGSGRLYGMLSGDRQDTQAKYIFSTIQTVSQDKILDQLPSNYFDYILIDEAHRSAAPSYQKIMHYFKPDFWLGMTATPERMDNQDVYALFDYNLAYEIRLRDALENKMLSPFHYIGVQDYEEDGITVDETTNLRYLTAPKRVKYILDQLDYYGYSGLKVHGLVFCSRQDEALELAQAFTDAGHQAKALTNQDSNERRRAVVRELEEGKIEYIITVNLFNEGIDIPCVNQVVMLRNTQSSIVFIQQLGRGLRKYPGKDFVTVLDFIGNYKNNYLIPIALTQDNSRSIDEAKAELRVPPVIDVSTINFTEIAQEKILQSLDKVKLDSMKELRTAYQDLKNKLGKVPLLQDFYRFGSVSPIVFASNGNLDNYDIFLQKMGEDSELNLYQGQVLTFITKELLNGMRPHELILLDLLTKNKVCSLSDYEQELQEKQIYFNMELMNSVENILNLSFFDVKAGKTTKAEQYGGIPIVEKVNLLDYQLNDQIKTSLNNPKFYQLWQDVIQTGLLLNEEYQNKKQFTFYQKYTRKDVCRLLNWEKDVSAPMYGYRVGEKECPIFITYKKDSEDKRNAKYRNDLQNGKSLRWYTRSPRHIDSDEVQRLLAKDEMGNYKIKLHLFVKRSDADGKGFYYLGEGKIVSDSVREEIVGKKTAVGMNIELQHPLETKMYDLLFTE GT:EXON 1|1-951:0| BL:SWS:NREP 2 BL:SWS:REP 164->243|PKS1_DICDI|2e-04|30.4|79/3147| BL:SWS:REP 239->547|IRC3_YEAST|2e-21|26.8|306/689| SEG 476->487|errravvrelee| BL:PDB:NREP 3 BL:PDB:REP 164->243|2h84A|6e-05|30.4|79/363| BL:PDB:REP 221->546|2fwrD|1e-12|28.5|298/428| BL:PDB:REP 816->942|1x9yA|5e-04|32.5|117/346| RP:PDB:NREP 3 RP:PDB:REP 34->180|1byrA|3e-10|18.6|140/152| RP:PDB:REP 235->375|3e0jC|2e-09|6.6|137/409| RP:PDB:REP 443->623|3earA|6e-07|18.9|164/206| RP:PFM:NREP 2 RP:PFM:REP 216->359|PF04851|3e-13|35.5|141/177|ResIII| RP:PFM:REP 674->950|PF11907|3e-40|42.9|254/264|DUF3427| HM:PFM:NREP 4 HM:PFM:REP 672->948|PF11907|7.8e-81|38.8|260/274|DUF3427| HM:PFM:REP 210->361|PF04851|2e-33|34.2|149/184|ResIII| HM:PFM:REP 460->533|PF00271|6.5e-13|25.7|74/78|Helicase_C| HM:PFM:REP 559->604|PF10245|6.9e-05|28.3|46/243|MRP-S22| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF04851|IPR006935| GO:PFM GO:0005524|"GO:ATP binding"|PF04851|IPR006935| GO:PFM GO:0016787|"GO:hydrolase activity"|PF04851|IPR006935| RP:SCP:NREP 3 RP:SCP:REP 37->203|1xdoA4|3e-12|12.7|158/187|d.136.1.4| RP:SCP:REP 207->376|2fwrA2|5e-17|29.3|157/234|c.37.1.19| RP:SCP:REP 444->532|2eyqA5|1e-06|16.9|89/211|c.37.1.19| HM:SCP:REP 25->181|1byrA_|4.5e-09|19.3|150/152|d.136.1.1|1/1|Phospholipase D/nuclease| HM:SCP:REP 157->401|1z3iX2|1.3e-41|24.5|241/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 311->549|1z3iX1|1.5e-32|22.7|198/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 577 OP:NHOMOORG 439 OP:PATTERN -------------1----1-11----------12-1---1------1---3-1---1---1------- --1-121-1111-2-1-----1--------------1----------1-----11-------2----11---111------1-------1-3---1-----------------------------1-112-112------1---2-21--1-1--11------2---24-1--------------------321--------1---------------222--211---11-1-221111-1111211111--12-2-1222111-22---21-------1--------222222222211122--12211---1112-1111---11333-111-2-1---2----2-----31----1-21------1111--4-------------1-1------------------11111-12-----------------1-111---22-11-----------1--1-----------------------------------------1----------------------2------1---2----1--1-1-13---1---------1-------431111--1----1112-11-1112112-12-1-----1-1--------------3311221-1-115113-42111-1112--121---1---------11112111222112111-2111112122211-1111111122321111111122111111112212121----------------------------11-211----------------------1-1--1------1-1-1---211112111---1211111-1122-1-------1------7-11--------------1----1-----1-------1------1----------1- ------1-----111111--1111-111111111111111111-11111-1--11111111111111--11111111--112211111-22-1-111111-11211-1------------------------------------------------------------------1--------------1--------1 ----------111-------------------------------------------------------------------------------------11----------1----------1-------1111----------------------------------1---1--- STR:NPRED 700 STR:RPRED 73.6 SQ:SECSTR #################################TTTHHHHHHHHHHHHcccEEEEEEccccc##HHHHHHHHHHHHTTcEEEEEEEcTTcccHHHHHHHHHHTTccEEEEcccccccccEEEE###TTTEEEEEcccccHHHHHTccEEEEEE##EccHHHHHHHHHHHHHHHHTcEEccHHHTTccHHHHHTHHHHHHHcGGGcHHHHHHcccccccccccHHHHHcccccEEccHHHHHHTcccccccccccccccccccTTcEEEccGGGccccHHHHHHHHHHHHHccccccccccccccTTEEEEEEEEEcccccccccEEEEEccccEEEEEEcccTTTccTTcEEEEEEEEcTcccTTccEEEEEEEcEEEcccGEccccTTccHHHHHcccEEEEccccccccTTEEEEEccccccEEETTEEEcGGGTcccEEEEEccccHHHHHHHHHHHHTTccEEEEcTTcccccccccccEEEEEcTTHHHHccccccEEEEccEEEEEEEccccEEEEEEEEccHHHHHccHHHHHHHHHTTccEEEEccccccTTHHHHHHHHHHHccEEcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHTTHHHHHHHHHTTcH################################################################################################################################################################################################HHHTTcccccEEEccc####cccEETTcccc#ccEEEEEEETTEEEEEEEEEEcc##GGGGGc##cTTTc#cEEEEEEcTTcccEEETTEEEEEETTEEEEcccTTTTTcccccccccHHHHHHccE######### DISOP:02AL 1-3,567-573,606-606,868-873,876-877,917-927| PSIPRED cccHHHHHHHHHHHHHcccccccccccEEccccccHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHcccccEEEEccccccccEEEEEEEccccEEEEEcccccccHHcccEEEEEEEcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHccccccEEEEEEcccccccccEEEEcHHHHccHHHHHHccHHHccEEEEEcHHHcccHHHHHHHHHccHHHEEEEEccccccccHHHHHHHcccccccccHHHHHHcccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccccEEEEccHHHHccccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEEccccHHHcccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHcccHHHHHHccccEEEHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHccccccccccccEEcccccccEEEEEcccccccccccccccccccccEEEEcccccccccHHHHHHHccHHccccccEEEEEEEEcccccccEEEEEEEEEEccccccccccccccEEEEEEEccccHHHHHHHHccc //