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Lactobacillus salivarius UCC118 (lsal0)
Gene : truB
DDBJ      :truB         tRNA pseudouridine synthase B
Swiss-Prot:TRUB_LACS1   RecName: Full=tRNA pseudouridine synthase B;         EC=5.4.99.-;AltName: Full=tRNA pseudouridine 55 synthase;         Short=Psi55 synthase;AltName: Full=tRNA-uridine isomerase;AltName: Full=tRNA pseudouridylate synthase;

Homologs  Archaea  60/68 : Bacteria  885/915 : Eukaryota  189/199 : Viruses  0/175   --->[See Alignment]
d.265.1
:302 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->224 1k8wA PDBj 2e-41 40.5 %
:RPS:PDB   2->283 2ab4A PDBj 2e-39 34.6 %
:RPS:SCOP  2->239 1r3eA2  d.265.1.2 * 1e-41 37.3 %
:HMM:SCOP  1->240 1k8wA5 d.265.1.2 * 6.6e-73 42.0 %
:RPS:PFM   23->179 PF01509 * TruB_N 4e-36 49.7 %
:HMM:PFM   23->179 PF01509 * TruB_N 1.8e-56 47.0 149/149  
:BLT:SWISS 1->302 TRUB_LACS1 e-175 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99383.1 GT:GENE truB GT:PRODUCT tRNA pseudouridine synthase B GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 615895..616803 GB:FROM 615895 GB:TO 616803 GB:DIRECTION + GB:GENE truB GB:PRODUCT tRNA pseudouridine synthase B GB:NOTE COG0130 [J] Pseudouridine synthase GB:PROTEIN_ID ABD99383.1 GB:DB_XREF GI:90820744 GB:GENE:GENE truB LENGTH 302 SQ:AASEQ MDGILPLYKERGMTSNDAVIKCRKIFKTRKIGHSGTLDPEVDGVLPICVGKATKVVNYLMDSGKVYKGEITLGFATTTEDLEGEVISKVKLSEPFSDEKINEILSSFIGDIIQVPPIYSAIKVNGKKLYEYARAGEKVDIPERRVHIEYFKQIFPSKFDKEKGQQTIYFEVGCGKGTYVRTLAVDVGKKLGVPAVMSDLTRLKSGGFQIGMAKSLSQLEKLAHENKLSESLYPIDYAVKDLPRYDLKLEQWRIVKNGGFLSVNTFKEDYDRVNLFYDDRIRCIYQYNKEKNRYQSERMIDLS GT:EXON 1|1-302:0| SW:ID TRUB_LACS1 SW:DE RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-;AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase;AltName: Full=tRNA-uridine isomerase;AltName: Full=tRNA pseudouridylate synthase; SW:GN Name=truB; OrderedLocusNames=LSL_0574; SW:KW Complete proteome; Isomerase; tRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->302|TRUB_LACS1|e-175|100.0|302/302| GO:SWS:NREP 2 GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| BL:PDB:NREP 1 BL:PDB:REP 1->224|1k8wA|2e-41|40.5|215/304| RP:PDB:NREP 1 RP:PDB:REP 2->283|2ab4A|2e-39|34.6|266/300| RP:PFM:NREP 1 RP:PFM:REP 23->179|PF01509|4e-36|49.7|149/149|TruB_N| HM:PFM:NREP 1 HM:PFM:REP 23->179|PF01509|1.8e-56|47.0|149/149|TruB_N| GO:PFM:NREP 1 GO:PFM GO:0006396|"GO:RNA processing"|PF01509|IPR002501| RP:SCP:NREP 1 RP:SCP:REP 2->239|1r3eA2|1e-41|37.3|225/228|d.265.1.2| HM:SCP:REP 1->240|1k8wA5|6.6e-73|42.0|231/242|d.265.1.2|1/1|Pseudouridine synthase| OP:NHOMO 1358 OP:NHOMOORG 1134 OP:PATTERN 111111---11111--11111111111-11-1111111111111-11111111111111111111111 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111-11--111111111-1-1111111-111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111-11111111111111111111111111111111111111111111111111111111111111111111---1-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111-1-------1111111111111111111111111111111-111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111-111111-111111-111111111111111111 2211122-411-1111232222222222222222212222222222222222221221222222222212222222212222222222-2222222222212221312423231-232221222312226F2-4242--1312221222-3-122232213421121511-11212232H2222233433222222223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 280 STR:RPRED 92.7 SQ:SECSTR ccEEEEEEEcccccHHHHHHHHHHHTTcccEEEcccccTTcEEEEEEEEGGGGGGGGGGTTccEEEEEEEEETEEETTccTTccEEEEccccccccHHHHHHHHHTTcEEEEEccccccccccccccHHHHHHTTcccccccEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEcTTccHHHHHHHHHHHHTccEEEEEEEEEEETTEETTTcccTTTccHHHHcHHHHHHcEEGGGccTTccEEEEcTTTHHHHTTcccEETTTccccccc###ccccEEEEE################### PSIPRED ccEEEEEEccccccHHHHHHHHHHHHcccEEccccccccccccEEEEEEccHHHHHHHHHcccEEEEEEEEEEEEEccccccccEEEEEcccccccHHHHHHHHHHHcccEEEccccEEEEEEccHHHHHHHHcccEEEccccEEEEEEEEEEEcccccccccccEEEEEEEEcccccHHHHHHHHHHHccccEEEEEEEEEEEccccHHHcccHHHHHHHHHHHHHHHHcccHHHHHHcccEEEEcHHHHHHHHcccEEEcccccccccEEEEEEcccEEEEEEEEccccEEEEEEEEEEc //