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Lactobacillus salivarius UCC118 (lsal0)
Gene : xerC.3
DDBJ      :xerC         Phage integrase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  192/915 : Eukaryota  1/199 : Viruses  23/175   --->[See Alignment]
d.163.1
:315 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->109 2khqA PDBj 3e-09 30.4 %
:BLT:PDB   112->296 2a3vC PDBj 4e-11 27.9 %
:RPS:PDB   9->303 2a3vA PDBj 8e-20 18.4 %
:RPS:SCOP  7->301 1p7dA  d.163.1.1 * 1e-17 13.8 %
:HMM:SCOP  116->307 1a0pA2 d.163.1.1 * 2.6e-31 34.9 %
:RPS:PFM   142->300 PF00589 * Phage_integrase 6e-16 39.3 %
:HMM:PFM   116->298 PF00589 * Phage_integrase 8.3e-31 31.1 164/173  
:HMM:PFM   69->142 PF00568 * WH1 0.00028 22.9 70/111  
:BLT:SWISS 121->301 XERCL_THETN 6e-21 33.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99575.1 GT:GENE xerC.3 GT:PRODUCT Phage integrase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION 798199..799146 GB:FROM 798199 GB:TO 799146 GB:DIRECTION + GB:GENE xerC GB:PRODUCT Phage integrase GB:NOTE COG0582 [L] Integrase GB:PROTEIN_ID ABD99575.1 GB:DB_XREF GI:90820936 GB:GENE:GENE xerC LENGTH 315 SQ:AASEQ MGRRKKILFTDYFINLVDTYKLNQVGERTYNKYCLTHRHLKKICPDLYLQDMNANDYQQILNEFGKTHEKATTVDFHHQLAWALKRAYNVDGLTDRDVTYDAQIPKGVVTNKKKPKFMELDDMKKLVVTLKYLNSSYANFFLILLKTGLRFAELLGITLEDIDFEKKTISINKTLDYKKGAYDENFSRRFKSTKNKYSIRTIPVDDAVIYMFWRNAKGADKDESIFGSIKGFQYNSSLNNKLEQTCKYAGVPVITLHGLRHEHATYLVSQGIDSRAVAERLGHVDDSVTREVYIHRLETERVRDNQQIMRSVSKI GT:EXON 1|1-315:0| BL:SWS:NREP 1 BL:SWS:REP 121->301|XERCL_THETN|6e-21|33.7|178/391| BL:PDB:NREP 2 BL:PDB:REP 7->109|2khqA|3e-09|30.4|102/110| BL:PDB:REP 112->296|2a3vC|4e-11|27.9|179/317| RP:PDB:NREP 1 RP:PDB:REP 9->303|2a3vA|8e-20|18.4|283/313| RP:PFM:NREP 1 RP:PFM:REP 142->300|PF00589|6e-16|39.3|140/168|Phage_integrase| HM:PFM:NREP 2 HM:PFM:REP 116->298|PF00589|8.3e-31|31.1|164/173|Phage_integrase| HM:PFM:REP 69->142|PF00568|0.00028|22.9|70/111|WH1| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 1 RP:SCP:REP 7->301|1p7dA|1e-17|13.8|275/280|d.163.1.1| HM:SCP:REP 116->307|1a0pA2|2.6e-31|34.9|169/182|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 437 OP:NHOMOORG 218 OP:PATTERN ---------1---------------------------------------------1------------ -11-----222-1-----------1------1-1-1-1-1---2------------------2------1-----32111123------211--------------1-----------------------------------11---------------------------------------3-------11-223233-11221111-13311-22--222--6-112411421222141133221-2-4283-127-4212532244-73-1-566656312-1321--2141231111333255111-2265212646331--3-1--1-13323122--1---1-1-251-1122-11-11-214--1-1---------------11-----------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------1------2---------------1-----------------1--------2---------1-----------------------1--------------------------------------------------------------------1---------------------------------------1-------------------21-------------------------------------------------21-------------------1------------------------1------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- -1---------------------------------------------------------------------------1----11111-1---------11-1---1-1--1--1--1---1----1-1--1-1--11-------------------------------------- STR:NPRED 305 STR:RPRED 96.8 SQ:SECSTR ####cHHHHHHHHHHHHHHTTccGccHHHHHHHHHHHHHHHTTcccccGGGccHHHHHHHHHHHHcHTTTcccHHHHHHHHHHHHHHHHHTccccccTTcccccccccTccccccccccHHHHHHHTHccTcccHHHHHHHHHHHHccccHHHHHTccGGGEETTTTEEEEEEETTTEEEEHHHHHHHHHHHHTccTTcccccccTTcTTTcTTGGGcGGGccTTTTEEEcccccHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHHTTccHHHHHHHHTcccHHHHGHGGcccccccHHHcccGGc###### DISOP:02AL 1-2,108-109| PSIPRED ccHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHcccHHHHcccccEEEEEEEEccccccccccccccccccccccccEEEEccHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHcc //