[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Lactobacillus salivarius UCC118 (lsal0)
Gene : xerC.4
DDBJ      :xerC         DNA integration/recombination/inversion protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  169/915 : Eukaryota  1/199 : Viruses  23/175   --->[See Alignment]
d.163.1
:305 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->91 2khqA PDBj 3e-10 40.2 %
:BLT:PDB   124->287 2a3vB PDBj 1e-06 30.7 %
:RPS:PDB   8->294 2crxB PDBj 8e-19 9.8 %
:RPS:SCOP  114->289 1aihA  d.163.1.1 * 4e-20 27.2 %
:HMM:SCOP  113->296 1a0pA2 d.163.1.1 * 1.4e-32 33.9 %
:RPS:PFM   138->286 PF00589 * Phage_integrase 6e-13 42.2 %
:HMM:PFM   113->287 PF00589 * Phage_integrase 1.5e-29 35.2 162/173  
:BLT:SWISS 143->298 VINT_BPL54 3e-15 31.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99727.1 GT:GENE xerC.4 GT:PRODUCT DNA integration/recombination/inversion protein GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(944461..945378) GB:FROM 944461 GB:TO 945378 GB:DIRECTION - GB:GENE xerC GB:PRODUCT DNA integration/recombination/inversion protein GB:NOTE COG0582 [L] Integrase GB:PROTEIN_ID ABD99727.1 GB:DB_XREF GI:90821088 GB:GENE:GENE xerC LENGTH 305 SQ:AASEQ MRRKRILFYNYFEDWINIYKVGAVSERTIDKYWLAHRHLKKLAPDLELGQITRIEYQKIINEFAETHEKATTMDFHHQLKSSILDAFDDGLINRDPTRKTVVKGKKPGKKKQKYLSEFELKMLLRHLHLGTEPNLDWLILLVAKTGLRFGEALGLTKEDFDFENQIINISKTWDYKAARGGFKSTKNKSSIRKVQLDWKLCMQFNTLLRDFPDGTPIFVKKRVFNSTVNNRLKQYCEELAIPIISIHGLRHTHASMLLFAGVSIASVAKRLGHADMTTTQQTYLHIIQELENKDNTKIMQHLATL GT:EXON 1|1-305:0| BL:SWS:NREP 1 BL:SWS:REP 143->298|VINT_BPL54|3e-15|31.4|156/354| SEG 96->113|ptrktvvkgkkpgkkkqk| BL:PDB:NREP 2 BL:PDB:REP 6->91|2khqA|3e-10|40.2|82/110| BL:PDB:REP 124->287|2a3vB|1e-06|30.7|163/320| RP:PDB:NREP 1 RP:PDB:REP 8->294|2crxB|8e-19|9.8|286/309| RP:PFM:NREP 1 RP:PFM:REP 138->286|PF00589|6e-13|42.2|135/168|Phage_integrase| HM:PFM:NREP 1 HM:PFM:REP 113->287|PF00589|1.5e-29|35.2|162/173|Phage_integrase| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 1 RP:SCP:REP 114->289|1aihA|4e-20|27.2|147/170|d.163.1.1| HM:SCP:REP 113->296|1a0pA2|1.4e-32|33.9|168/182|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 393 OP:NHOMOORG 193 OP:PATTERN -------------------------------------------------------------------- -1--------1----1----------------1--------1--------------------2------1-----111-1221------1----------------1----------------------------------------1-1---------------------------------3-------11-223233-1221-1-1-122-1-32--121--6-11242-346342132255422-333173-124-421-432134-83-1-566346312-12-1--113-121-224443552111225421243431---111--11143123111-1-1---1-221-11121---11-113--1---------------------------------------------1-----------------------------------------------------------------------------3----------------------------------------------------------------------------1------------------------------4---------1--------1---------1-------------------------------1------------------------------------------------------------------------------------------------------------------------21-------------------------------------------------1---------------------------------------------1------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- -1---------------------------------------------------------------------------1----1111-11---------11-----1-1-1--11--1---1-1--1----1-1--11-------------------------------------- STR:NPRED 297 STR:RPRED 97.4 SQ:SECSTR ###cHHHcHHHHHHHHHHHHTGGccHHHHHHHHHHHHHHHHHHTTcccccccHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHTTcccGGGcHHHHHHHHHHHHHHHHTTccccccHHHHHHTTcccHHHHHHHHHHHHHHHHcccHHHHHHccGGGEEEcTTccEEEEEcccEEEEccHHHHHHHHHHHHHHTcTTcTTcccccEEcTTccEEcccHHHHHHHHHHHHHHccccTTccccccTTHHHHHHHHHHHHTTccHHHHHHHHTcccHHHHHHHTcccHHHHHTTcHHHccH##### DISOP:02AL 1-1,103-112| PSIPRED ccHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHcccccccHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHcccHHHEEccccEEEEcccEEEcccccccccccccccEEEEEccHHHHHHHHHHHHHccccccEEEcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHccc //