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Lactobacillus salivarius UCC118 (lsal0)
Gene : xerC.5
DDBJ      :xerC         Phage integrase
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  440/915 : Eukaryota  1/199 : Viruses  40/175   --->[See Alignment]
a.60.9d.163.1
:381 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   70->165 2kd1A PDBj 3e-05 22.9 %
:BLT:PDB   180->364 2a3vB PDBj 2e-10 32.6 %
:RPS:PDB   70->376 3crxA PDBj 6e-30 9.5 %
:RPS:SCOP  72->169 1crxA1  a.60.9.1 * 2e-06 9.2 %
:RPS:SCOP  173->376 1crxA2  d.163.1.1 * 5e-24 10.0 %
:HMM:SCOP  176->373 1a0pA2 d.163.1.1 * 3.5e-42 31.6 %
:RPS:PFM   182->362 PF00589 * Phage_integrase 5e-22 39.9 %
:HMM:PFM   179->365 PF00589 * Phage_integrase 2.5e-40 37.3 166/173  
:HMM:PFM   83->116 PF01223 * Endonuclease_NS 0.00097 29.4 34/204  
:BLT:SWISS 23->374 INT_BACSU 5e-30 25.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABD99997.1 GT:GENE xerC.5 GT:PRODUCT Phage integrase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1228181..1229326) GB:FROM 1228181 GB:TO 1229326 GB:DIRECTION - GB:GENE xerC GB:PRODUCT Phage integrase GB:NOTE COG0582 [L] Integrase GB:PROTEIN_ID ABD99997.1 GB:DB_XREF GI:90821358 GB:GENE:GENE xerC LENGTH 381 SQ:AASEQ MTKIIKYTNKDNETLYKFRFYAGLDEITGKQRYIRRQGFKSEKDAKTELLKIEYLVSTNQYFKSVKSGKFGDVLDEWLALHKETVKASTWRYIERRVKNHVRPYFKDMYVDKITLRHCQDFTNKAFAAAPVGFTQIISIVKNTLDYALRLGMIESNPMLYVIKPKKQTTISDKHGNYYNKDELKKFLAAAKDTDLKKYTLFRLLAYSGLRVGECLALTWHDLDYKNNTIAINKTYAKTNNGIKIQTPKTKASIRKVSLDVETIQVLKEWQLNQRKQLLKVGINAMNKQQLIFSNNKNSFIANETVRLAIHQIAKKTGIHPITTHGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYTHAIQDKQDKIGDEFAKYINF GT:EXON 1|1-381:0| BL:SWS:NREP 1 BL:SWS:REP 23->374|INT_BACSU|5e-30|25.9|344/368| BL:PDB:NREP 2 BL:PDB:REP 70->165|2kd1A|3e-05|22.9|96/118| BL:PDB:REP 180->364|2a3vB|2e-10|32.6|181/320| RP:PDB:NREP 1 RP:PDB:REP 70->376|3crxA|6e-30|9.5|304/323| RP:PFM:NREP 1 RP:PFM:REP 182->362|PF00589|5e-22|39.9|158/168|Phage_integrase| HM:PFM:NREP 2 HM:PFM:REP 179->365|PF00589|2.5e-40|37.3|166/173|Phage_integrase| HM:PFM:REP 83->116|PF01223|0.00097|29.4|34/204|Endonuclease_NS| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 2 RP:SCP:REP 72->169|1crxA1|2e-06|9.2|98/110|a.60.9.1| RP:SCP:REP 173->376|1crxA2|5e-24|10.0|201/212|d.163.1.1| HM:SCP:REP 176->373|1a0pA2|3.5e-42|31.6|177/182|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 1061 OP:NHOMOORG 491 OP:PATTERN ----------------1---------------111-------1--11--------------111---- -12--111113-1111-----1--2-1111111323-1-1-2371-1-1-------1-----51-1-312-233332222243-----13111---1--1--1---1--1-11111111111111-----------1111123313-111-----------------11--------------4----11113155656453454522313661334444644--8122453148846336447784435553E412491433466435539513167766642412321--21522412324563663232325721264644122432212334525866211-21411-251-4158-32321-315--1-23-----1-----1---1--1---------------1-1------1--1-------------1-------------------------1-----111111111---------1-------------2------------------------1---111-----------1-1------1-11-11111111--1--1-231---2-1311-----1---11------1-1611112111-2-1-1-1215-12-----111---12-1112----1-------11----1-1--------2-----144121-21--1113--3111111111111------1-------------1---11---121--1-1--1111------1-----11-111-1-111--1-----121--------1-21--------1----11---1------------4-----2--111-11111111------1-221111--------1-2------1-------------------1-1---111--- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- -1-------------1-------------------------------------------------------------1----1111111---1-----1111---111111111--1---1-1--1-1--1-1--111-11------1------111------------------ STR:NPRED 308 STR:RPRED 80.8 SQ:SECSTR #####################################################################HHHHHHHHHHHHHTGccHHHHHHHHHHHHHHHHHHHHTcccccccHHHHHHHHHHHHHTcHHHHHHHHHHHHHHHHTTTcccGGGcHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHTccHHHHHHcccTTEEEcccccEEEcccccccccccccccccHHHHHHHHHHHHHHcGGGcTTcccccEGcEcTTccEEccccccccHHHHHHHHHHHHHHHHccccccccccccTTHHHHHHHHHHHHTcccHHHHHHHTTcccHHHHHHHHcTTccccccHHHHHHTT#### DISOP:02AL 1-1,167-171| PSIPRED cccEEEEEcccccEEEEEEEEEccccccccEEEEEEcccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHcccHHHccccccEEEEccccccccccEEcccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHcc //