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Lactobacillus salivarius UCC118 (lsal0)
Gene : xerC.6
DDBJ      :xerC         Phage integrase
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  530/915 : Eukaryota  1/199 : Viruses  40/175   --->[See Alignment]
a.60.9d.163.1
:381 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   70->165 2kd1A PDBj 1e-05 23.4 %
:BLT:PDB   180->364 2a3vB PDBj 7e-11 30.5 %
:RPS:PDB   70->376 3crxA PDBj 6e-32 8.6 %
:RPS:SCOP  72->166 1crxA1  a.60.9.1 * 5e-06 9.5 %
:RPS:SCOP  173->376 1crxA2  d.163.1.1 * 7e-25 9.0 %
:HMM:SCOP  176->373 1a0pA2 d.163.1.1 * 4.7e-42 32.8 %
:RPS:PFM   182->362 PF00589 * Phage_integrase 5e-22 40.5 %
:HMM:PFM   179->366 PF00589 * Phage_integrase 1.3e-38 37.7 167/173  
:BLT:SWISS 70->370 VINT_BPL54 8e-28 33.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABE00450.1 GT:GENE xerC.6 GT:PRODUCT Phage integrase GT:DATABASE GIB00337CH01 GT:ORG lsal0 GB:ACCESSION GIB00337CH01 GB:LOCATION complement(1734886..1736031) GB:FROM 1734886 GB:TO 1736031 GB:DIRECTION - GB:GENE xerC GB:PRODUCT Phage integrase GB:NOTE COG0582 [L] Integrase GB:PROTEIN_ID ABE00450.1 GB:DB_XREF GI:90821811 GB:GENE:GENE xerC LENGTH 381 SQ:AASEQ MTKIIKYTNKDNETLYKFRFYAGIDEITGKQRYIRRQGFTSLKAAKDELLKIEYLVSTNQYFKSVKSGKFGDVLDEWLALHKETVKASTWQFIELRANNHVRPYFKDMYVDKITLRHCQDFVNKTFKKAPVAYVYSLSIVKNTLDYALRLGMIESNPMLYVIKPKKQASISDKHDNYYNKDELKKFLDVAKDTSLKKYTLFRLLAYSGMRIGECLALTWHDLDYKNNTIAINKTLARTNNGIKIQTPKTKASNRVISLDNETIQVLKMWQLEQRKQLLKVGINAMDSKQLIFSNGKNSFIIVPTVRLAIKQIAKKAGIHSITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIYTHAMKEKQDKIGDEFAKYINF GT:EXON 1|1-381:0| BL:SWS:NREP 1 BL:SWS:REP 70->370|VINT_BPL54|8e-28|33.6|292/354| BL:PDB:NREP 2 BL:PDB:REP 70->165|2kd1A|1e-05|23.4|94/118| BL:PDB:REP 180->364|2a3vB|7e-11|30.5|174/320| RP:PDB:NREP 1 RP:PDB:REP 70->376|3crxA|6e-32|8.6|304/323| RP:PFM:NREP 1 RP:PFM:REP 182->362|PF00589|5e-22|40.5|158/168|Phage_integrase| HM:PFM:NREP 1 HM:PFM:REP 179->366|PF00589|1.3e-38|37.7|167/173|Phage_integrase| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 2 RP:SCP:REP 72->166|1crxA1|5e-06|9.5|95/110|a.60.9.1| RP:SCP:REP 173->376|1crxA2|7e-25|9.0|201/212|d.163.1.1| HM:SCP:REP 176->373|1a0pA2|4.7e-42|32.8|177/182|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 1251 OP:NHOMOORG 593 OP:PATTERN --------1111111-1---------------111----1-11--11----------111-111---- -22--13111212111-----1--2-1111116223-1-1-237--1---------1-----4-11-212-133332222243-----131111111--2-111--211111111111111111-1--1--1----11111234-3-111-----------------1---------------4----22113155656553455433423662335433664--9122453-48846336447784446654E41349241347743553A413268766642412222--33633523324563663232325721264644324332212335525866111-21311-361-524714232114261-1-34----11111--1---1--1-----------------1------1-1------1---11-11--1------12--------------1-----211111114---------1---1111------1--------1------------------11-11----------1---1----1131-11111111211--11241---1132111--1--1--21-------1121-112111-211-1-1213--2----1121----22-223-1-12-----1--22---1----------2-----1442221321-2213115222222111111----12711---1--11-1121-122111122--112112222112---2-----11111111-111---1---1-21------1-1-111111111-11111111--1----11--1-111111112-12311111111111111--1-112222--------1-2------1------------------1--1-11111--1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- -1-------------1-------------------------------------------------------------1----1111111---1-----1111---111111111--1---1-1--1-1--1-1--111-11------1------111------------------ STR:NPRED 308 STR:RPRED 80.8 SQ:SECSTR #####################################################################HHHHHHHHHHHHHTGccHHHHHHHHHHHHHHHHHHHHTcccccccHHHHHHHHHHHHHTcHHHHHHHHHHHHHHHHTTTcccGGGcHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHTccHHHHHHcccTTEEEcccccEEEcccccccccccccccccHHHHHHHHHHHHHHcGGGcTTcccccEGcEcTTccEEccccccccHHHHHHHHHHHHHHHHccccccccccccTTHHHHHHHHHHHHTcccHHHHHHHTTcccHHHHHHHHcTTccccccHHHHHHTT#### DISOP:02AL 1-2,167-168,170-170| PSIPRED cccEEEEEcccccEEEEEEEEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHcccHHHccccccEEEEcccEEEcccEEEEEcccccccEEEEEccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHcc //