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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54851.1
DDBJ      :             putative phage integrase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  13/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.60.9d.163.1
:398 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   75->351 5crxB PDBj 2e-18 10.7 %
:RPS:SCOP  75->174 1crxA1  a.60.9.1 * 7e-05 10.6 %
:RPS:SCOP  167->373 1crxA2  d.163.1.1 * 1e-08 9.5 %
:HMM:SCOP  176->388 1a0pA2 d.163.1.1 * 4.5e-21 30.3 %
:HMM:PFM   211->376 PF00589 * Phage_integrase 1.4e-16 27.5 142/173  
:BLT:SWISS 32->331 INTR_STRAM 7e-09 26.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54851.1 GT:GENE BAD54851.1 GT:PRODUCT putative phage integrase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(13977..15173) GB:FROM 13977 GB:TO 15173 GB:DIRECTION - GB:PRODUCT putative phage integrase GB:PROTEIN_ID BAD54851.1 LENGTH 398 SQ:AASEQ MPRERLRPGEWGKITTKPAGPGKFTASTYVRDSDGVRRGVERSGPSREAAERNLKRHLQDRRAPIVDAAVNDRTTLAELFTVWIGTKDIAPQSIKNYRDTWKVHGAKQIGALRIREFPTSRAEQHLQRVAAKAPSAARQLRIVLLGMFKLAVRYDVLDHNPIREASRPTSKRKPVQVLSPEDFARVRAAIRDYCAGREGVGGPKPGRLLPAFVDVLISTGLRPNEVLGLRWHEVDLLATPPTVTVTGKLVPSGKVEGMPLHRQDYRKAGAPDHTVILPRLAVEALTTLLGESFPDGLADGPAADRPVFANRDGGWMDLHNLRRAFRAAMPEDLKWVVPYTTRRTVATLLRNELGPAQAQAQLSHAQLSTTERYMQRQTHGPDARAALDKYAGEGADGL GT:EXON 1|1-398:0| BL:SWS:NREP 1 BL:SWS:REP 32->331|INTR_STRAM|7e-09|26.3|281/388| SEG 356->368|aqaqaqlshaqls| RP:PDB:NREP 1 RP:PDB:REP 75->351|5crxB|2e-18|10.7|262/296| HM:PFM:NREP 1 HM:PFM:REP 211->376|PF00589|1.4e-16|27.5|142/173|Phage_integrase| RP:SCP:NREP 2 RP:SCP:REP 75->174|1crxA1|7e-05|10.6|94/110|a.60.9.1| RP:SCP:REP 167->373|1crxA2|1e-08|9.5|189/212|d.163.1.1| HM:SCP:REP 176->388|1a0pA2|4.5e-21|30.3|178/182|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 19 OP:NHOMOORG 13 OP:PATTERN -------------------------------------------------------------------- --------------2---------1-----------1----113-------1--1------2--3----1------------1----------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 316 STR:RPRED 79.4 SQ:SECSTR #########################################################################ccHHHHHHHHHTGGGccHHHHHHHHHHHHHHHHHHHTTcccccccHHHHHHHHHHHHHTcHHHHHHHHHHHHHHHHTTccccGGGcHHHHHHHHHHHHHHHHTTccccccccccHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHcccHHHHTTccGGGEEEcTTccEEEEEccccccTTccEEEEEEEETTEEEEEEEEEEccHHHHHHHHHHHHHHTGGGcTTcccccccccccHHHHHHHHHHHHHHHHcccccccccccTTHHHHHHHHHHHTcccHHHHHHHTTcccHHHHHHHcTT##ccccccHHHHHHT####### DISOP:02AL 1-8| PSIPRED cccccccccccEEEEEEEccccEEEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHcccHHHcccccccEEEEEEEEEcccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHcccccccccEEEccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc //