[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54853.1
DDBJ      :             putative DNA-binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1
:332 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   21->70 2axvB PDBj 6e-05 20.5 %
:RPS:PDB   93->206 3btaA PDBj 8e-05 2.9 %
:RPS:SCOP  19->69 1s4kA  a.35.1.6 * 4e-04 6.2 %
:HMM:SCOP  12->95 2b5aA1 a.35.1.3 * 1.3e-05 24.7 %
:HMM:PFM   189->239 PF08647 * BRE1 0.00041 15.7 51/96  
:HMM:PFM   27->84 PF01381 * HTH_3 0.0005 23.5 51/55  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54853.1 GT:GENE BAD54853.1 GT:PRODUCT putative DNA-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(15778..16776) GB:FROM 15778 GB:TO 16776 GB:DIRECTION - GB:PRODUCT putative DNA-binding protein GB:PROTEIN_ID BAD54853.1 LENGTH 332 SQ:AASEQ MQSRQRGSEQAARWSGTVAERIGNAVRRRRGEMKMSAVQLSKRTADLGYPITRGAIAKIESNSRNGKLDIAELMVLAAALELPPILLIFPDRPFEVIEFLPNREEDSIYAALWFTGEWLESRWSISAGDISRGDGAAPIILMRQFVASQRKATSAIVRLVEYERKMDQAVFEHRRLYGHSKHADLGREEARRAMDQVHAAAIEIHRWQSEIDKLRVEVSEASEAGAAALSGMQDLGIDVSPYSAGETGLELAQEMRNRGMTPRDYIKEIDDDGQLVERIVQRDIDRRATRPAEAMPAFDPSNLLAAMPEPEGDREPDDEFPVDPPNDDFEGR GT:EXON 1|1-332:0| SEG 71->88|aelmvlaaalelppilli| SEG 216->231|vevseaseagaaalsg| SEG 308->321|pepegdrepddefp| RP:PDB:NREP 2 RP:PDB:REP 21->70|2axvB|6e-05|20.5|44/303| RP:PDB:REP 93->206|3btaA|8e-05|2.9|105/1277| HM:PFM:NREP 2 HM:PFM:REP 189->239|PF08647|0.00041|15.7|51/96|BRE1| HM:PFM:REP 27->84|PF01381|0.0005|23.5|51/55|HTH_3| RP:SCP:NREP 1 RP:SCP:REP 19->69|1s4kA|4e-04|6.2|48/120|a.35.1.6| HM:SCP:REP 12->95|2b5aA1|1.3e-05|24.7|77/0|a.35.1.3|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 1 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- ------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 154 STR:RPRED 46.4 SQ:SECSTR ###################ccHHHHHHHHHHHHTccHHHHHTTTHTTT##ccHHHHHHHHTTcccccHHH######################cccTTcccccccEEEEEcccccccccEEEEEEE######TTEEEEEEcccccGGGccccccccccccccccccTTTT###ccHHHHHHHHHHHHHHHHHHHTcHHHHHHHHHHH############################################################################################################################## DISOP:02AL 1-15, 307-322, 325-332| PSIPRED cccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEcccccccccHHHHHHHHHHHHccccEEEEEccccHHHHHHccccccccEEEEEEEcHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHccccccHHHHEEcccccccccccccccccccccccccc //