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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54885.1
DDBJ      :             putative phage head
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  42/915 : Eukaryota  0/199 : Viruses  6/175   --->[See Alignment]
d.183.1
:436 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   157->431 2fteF PDBj 3e-46 45.0 %
:RPS:PDB   3->79 2bhpA PDBj 4e-04 23.0 %
:RPS:PDB   163->436 3e8kG PDBj 3e-39 40.3 %
:RPS:SCOP  141->436 1ohgA  d.183.1.1 * 1e-39 40.1 %
:HMM:SCOP  139->437 1ohgA_ d.183.1.1 * 1.4e-59 33.2 %
:RPS:PFM   15->123 PF06050 * HGD-D 7e-05 32.0 %
:RPS:PFM   236->431 PF05065 * Phage_capsid 4e-17 37.4 %
:HMM:PFM   148->433 PF05065 * Phage_capsid 8.6e-63 36.9 255/276  
:HMM:PFM   3->74 PF00171 * Aldedh 3.7e-05 36.2 69/462  
:BLT:SWISS 7->111 ATPF_BACWK 6e-04 23.1 %
:BLT:SWISS 142->431 COAT_BPHK7 2e-45 43.0 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54885.1 GT:GENE BAD54885.1 GT:PRODUCT putative phage head GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 32490..33800 GB:FROM 32490 GB:TO 33800 GB:DIRECTION + GB:PRODUCT putative phage head GB:PROTEIN_ID BAD54885.1 LENGTH 436 SQ:AASEQ MMTKTKLADLQKAAQAEVKRAREVAEKAQGESREMTDDERGVYDEAMRKGADLLEQIKVAKRDLEVLEAAKGLAAEIGEPAVEDVDAQGQLPVRERVKSLGLQVVESTAFKAALAPFKGGHVPERTRFQTDPIGIKGLFVGGSDTSAGAFVVPEQTGIVEMLGRRPLTIRNLVSVRRTGSDAVEYVEQTSHTNAAAVVPEATSAAAPTAPGTAGALVLNPNGGYKPEGSWAFVRKTAVVKTIAEWVPATKRALADVAALEGLINDELRADVAEAEEGQILNGDGSGENFTGINNWSGVQTQAFDTDLFTSVRKAITKARTVGRVNPNGIVVNPADAEAIDLAKDANERYYFGGPQAITQRTLWGLPVIESESQAAGEALVGDFAKAVLWDREETTVTITDSHADFFIRNLVAILAEERLAFAVTRPAAFVKTDIAA GT:EXON 1|1-436:0| BL:SWS:NREP 2 BL:SWS:REP 7->111|ATPF_BACWK|6e-04|23.1|104/100| BL:SWS:REP 142->431|COAT_BPHK7|2e-45|43.0|265/385| COIL:NAA 31 COIL:NSEG 1 COIL:REGION 8->38| SEG 194->215|aaavvpeatsaaaptapgtaga| BL:PDB:NREP 1 BL:PDB:REP 157->431|2fteF|3e-46|45.0|249/264| RP:PDB:NREP 2 RP:PDB:REP 3->79|2bhpA|4e-04|23.0|74/516| RP:PDB:REP 163->436|3e8kG|3e-39|40.3|243/247| RP:PFM:NREP 2 RP:PFM:REP 15->123|PF06050|7e-05|32.0|103/334|HGD-D| RP:PFM:REP 236->431|PF05065|4e-17|37.4|190/271|Phage_capsid| HM:PFM:NREP 2 HM:PFM:REP 148->433|PF05065|8.6e-63|36.9|255/276|Phage_capsid| HM:PFM:REP 3->74|PF00171|3.7e-05|36.2|69/462|Aldedh| RP:SCP:NREP 1 RP:SCP:REP 141->436|1ohgA|1e-39|40.1|274/280|d.183.1.1| HM:SCP:REP 139->437|1ohgA_|1.4e-59|33.2|277/0|d.183.1.1|1/1|Major capsid protein gp5| OP:NHOMO 53 OP:NHOMOORG 48 OP:PATTERN -------------------------------------------------------------------- ------1--------------2--------------21----------------------------------111------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------1------------------------------21-2--1-11111111---------------------------------------1----1--1--------------1-1---------------------1--1--------------------------------------------------------------------------------------------------1------1-1-------------------1------------------------------------------1-----1------------------1-----------------------------------1-------------1---1-------1-----1--2----------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------------------------------------------------------------------------1----------------------------------------------1-11-------1---------------1------ STR:NPRED 354 STR:RPRED 81.2 SQ:SECSTR ##TTcEEEEEEcccHHHHHHHHHHHHHHHHHHTTccHHHHH###HHHHHHHHHHHHTHHHHHHHHHHHHcccHHHHHHH##############################################################cccTTTGGGcccccccccccccccccTTGGGcEEEEccccEEEEEEEEccccccccccTT###############ccccccccccccccEEEEEEEEcEEEEEEEEEcTTTTccHHHHHHHTTTTHHHHHHHHHHHHHHcccccTTccccHHHHcEEccGcTTccHHHHHHHHHHHHHTTTcccccEEEccTTTTHHHHTcEETTTEEcccccccccccccTTccccccTTccTTEEEEEcHHHHcEEEEEEEEEEEEcccTTTTTcccEEEEEEEEEEEccccGGGEEEEEccc DISOP:02AL 1-5, 24-43, 81-111| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccEEccHHHHHHHcccccccccccEEcccccHHHHHccHHHHHHHHHHccccccccHHHHHHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccEEEEcccHHHHHHHHHHHHHHHHccccccEEEEcHHHHHHHHHHHcccccEEcccccccccccccccccEEcccccccccccccccEEEEEEEccEEEEEEcccccccccccEEEEEEEEEcccEEccccEEEEEEcc //