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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54893.1
DDBJ      :             putative phage tail
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  23/915 : Eukaryota  0/199 : Viruses  5/175   --->[See Alignment]
d.3.1
:1186 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  837->939 2if6A1  d.3.1.21 * 2e-05 15.4 %
:HMM:PFM   226->427 PF10145 * PhageMin_Tail 8.5e-21 27.6 192/202  
:HMM:PFM   52->128 PF00261 * Tropomyosin 0.00051 28.6 77/237  
:BLT:SWISS 228->494 YQBO_BACSU 6e-08 20.0 %
:BLT:SWISS 836->926 VG10_BPML5 2e-04 46.0 %
:TM
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54893.1 GT:GENE BAD54893.1 GT:PRODUCT putative phage tail GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 36972..40532 GB:FROM 36972 GB:TO 40532 GB:DIRECTION + GB:PRODUCT putative phage tail GB:PROTEIN_ID BAD54893.1 LENGTH 1186 SQ:AASEQ MTSPGSGAEVIGYAALQIIPSMRGTAGMLDQQLGAPLQAAGRSAGAAAGRAVAQGLDQAKAAVEAASARLAAARDKEADAAGKVRVAEAKLQELRARGNASASQLAAAEERLASAQRAADRAANARQQAVQGLSDARARLANHTDEATESESRFGAMMDAITGKLGPAEAKMLAAAAATAGLGAAMAAASEAISREKTVDVLAASLGATPELAAQYGAAASSLYAQGFGENFGAVTEAIGVVQSGFAALGSEGEASLETVTGRALNFAEVFGTDVATNVQVASQLVTNGLAKDSTEAFDLMTAAFQRVPVAMRDELPEILNEYGTHFRGLGFSGQQAFALLVDYAAQGKFALDKAGDALKEFSIRGSDMSTASQEAYKAIGLDAAAMSSAIAAGGAEAQAALQQTAQGLLAIEDPAERANTAIALFGTPVEDLAVDQIPAFLQALTGGSQSMADFAGATDEMGATLADNASTKLEVFKRQIQEGLIGALTSSVDWVDRNRGVAIGLGVALGTLATALVAAKVAAAGYAVAQGVMAAATGAGTAAIAANSLALGAYTIATGVIRGATMAWSAVQWVLNAALSANPIGLVVVAIAALAAGLVYAWQNSETFRNIVIGAWEGIKVAAQWTWDNVLRPIFDWIVGGYQKAWDVAKAAGEGIGAAWQWISDKATDAKDWVVNAFNSVVDFVTGLPGRVRDAASGLWDGITDSFRSAINWLISAWNNFRLGFDFTIPVINKRITFEVNTPDLPLLAGGGVAGRTADGRLWGPGTPTSDSILGIDALTGLPTALVSTREGVVKASAMDAGGAEIVAWLNAGWVPPIGLLRAMLPGLAGGGLVEAQEWVRGEAGKPYQYAGVGNPSWDCSAIAGAVWAKATGRNPYQRYFTTESDFEAMGWLPGLGGPNDISIGIMRGGGGPNSHMATTLGTLNVESSGTDGVEVGPGAQGAADFPLQFHWPLGGDPGGPGLAPELGTAPGGGGFGGGGGTGGSGGSGGSGGGGGAGGGTSSRPAGTAVPVWVDNWPSNFGISSSPGTGTTTAPSSTPGGPGVDEVYNAPSATAPGDAGAQPAEQAAHPLQGAPGLLGELADGPAPWWMAATPEQAAANLGRQAGDLAAQTVQGAQDFFANNWKEMLQTGAALVGMGAAGGGRGDTYNIIGPDPRQAAMAVDRVQRRRTMAMRRGGGNGGFGVR GT:EXON 1|1-1186:0| BL:SWS:NREP 2 BL:SWS:REP 228->494|YQBO_BACSU|6e-08|20.0|265/1585| BL:SWS:REP 836->926|VG10_BPML5|2e-04|46.0|87/100| COIL:NAA 91 COIL:NSEG 1 COIL:REGION 52->142| TM:NTM 3 TM:REGION 502->524| TM:REGION 537->559| TM:REGION 577->599| SEG 38->55|qaagrsagaaagravaqg| SEG 59->81|akaaveaasarlaaardkeadaa| SEG 111->131|rlasaqraadraanarqqavq| SEG 168->192|aeakmlaaaaataglgaamaaasea| SEG 381->411|gldaaamssaiaaggaeaqaalqqtaqglla| SEG 501->554|gvaiglgvalgtlatalvaakvaaagyavaqgvmaaatgagtaaiaanslalga| SEG 585->600|iglvvvaiaalaaglv| SEG 955->1010|lggdpggpglapelgtapggggfgggggtggsggsggsgggggagggtssrpagta| SEG 1025->1044|ssspgtgtttapsstpggpg| SEG 1132->1146|gaalvgmgaagggrg| SEG 1165->1185|rvqrrrtmamrrgggnggfgv| HM:PFM:NREP 2 HM:PFM:REP 226->427|PF10145|8.5e-21|27.6|192/202|PhageMin_Tail| HM:PFM:REP 52->128|PF00261|0.00051|28.6|77/237|Tropomyosin| RP:SCP:NREP 1 RP:SCP:REP 837->939|2if6A1|2e-05|15.4|91/182|d.3.1.21| OP:NHOMO 32 OP:NHOMOORG 29 OP:PATTERN --------------------------------------------------1----------------- ----11-1--1---2----------1------1---2--1-------------------------------------------------------------------------------------------------------------------------------------------------1-------------1----1---1---------------11---111---------------------1-------------------------------------------------------------------------1-------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------2-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------1----------------------------------------1---------------1-1-----1----------------- DISOP:02AL 1-5, 32-55, 72-167, 209-217, 370-371, 889-1119, 1173-1186| PSIPRED ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccc 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