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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54912.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  29/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
e.6.1
:305 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   52->124 2d29A PDBj 3e-09 43.8 %
:RPS:PDB   66->227 2d29A PDBj 2e-12 22.2 %
:RPS:SCOP  55->176 1u8vA2  e.6.1.1 * 1e-09 13.1 %
:HMM:SCOP  4->181 1jqiA2 e.6.1.1 * 9.9e-17 28.0 %
:HMM:PFM   77->125 PF02770 * Acyl-CoA_dh_M 4.2e-12 42.9 49/52  
:HMM:PFM   119->177 PF11380 * DUF3184 0.00088 32.8 58/691  
:BLT:SWISS 58->150 ACDSB_BOVIN 5e-07 29.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54912.1 GT:GENE BAD54912.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 53250..54167 GB:FROM 53250 GB:TO 54167 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD54912.1 LENGTH 305 SQ:AASEQ MHTVFDHLLTEEPGGPLGSVTEAWERHRDVARRFTDTVDVAVAGGFAADRLGYAFLSGYQAAVAALLPELPRDRPLALAATEEGGGHPAAIRTTATERADGWSVSGTKTFATLGSLAGRLVVIASVGAGADGRNRLRAMLVDATAPGVHVTDRPALAFAPEIPHATVTFTDTPATALPGDGYADVLKPFRTVEDIHVIAAAAGWLVRVAREAGWPPPVRQRLLATVAALRGLGAARPDSPGVHVALGGVLDEFERLLGELAPRWDAVDESTRSRWERDRPLLSVAGRVRAQRLATAWRAVGEPGE GT:EXON 1|1-305:0| BL:SWS:NREP 1 BL:SWS:REP 58->150|ACDSB_BOVIN|5e-07|29.3|92/432| SEG 38->49|vdvavaggfaad| BL:PDB:NREP 1 BL:PDB:REP 52->124|2d29A|3e-09|43.8|73/386| RP:PDB:NREP 1 RP:PDB:REP 66->227|2d29A|2e-12|22.2|162/386| HM:PFM:NREP 2 HM:PFM:REP 77->125|PF02770|4.2e-12|42.9|49/52|Acyl-CoA_dh_M| HM:PFM:REP 119->177|PF11380|0.00088|32.8|58/691|DUF3184| RP:SCP:NREP 1 RP:SCP:REP 55->176|1u8vA2|1e-09|13.1|122/275|e.6.1.1| HM:SCP:REP 4->181|1jqiA2|9.9e-17|28.0|175/231|e.6.1.1|1/1|Acyl-CoA dehydrogenase NM domain-like| OP:NHOMO 33 OP:NHOMOORG 29 OP:PATTERN -------------------------------------------------------------------- ----1-------------------------------1----------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1-11----------------------------------------1----------------------------------------------------------------------------------1111--------------------------------------------1---11-------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2222111-111111---------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 247 STR:RPRED 81.0 SQ:SECSTR ###################################################HHHHcccccTTcEEHHHHHTccccEEEEcccTTcccGGGcccEEEEETTEEEEEEEEEEEETTTTccEEEEEEEcccGGGTTTTEEEEEEEcccccEEEcccccccccTTccEEEEEEEEEEEEGccTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEETTEEGGHHHHcccccccTTcccccGG####GcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH### DISOP:02AL 302-305| PSIPRED ccccHHccccHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccEEEEEEcccccccHHHcEEEEEEEccEEEEEEEEEEEEccccccEEEEEEEEcccccccccEEEEEEEcccccEEEcccHHHcccccccEEEEEEEcccHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccc //