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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54916.1
DDBJ      :             putative membrane protein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  147/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
f.51.1g.43.1
:286 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   1->47 2djaA PDBj 4e-05 19.1 %
:RPS:SCOP  4->47 2djaA1  g.43.1.1 * 3e-05 20.5 %
:RPS:SCOP  68->231 2ic8A1  f.51.1.1 * 1e-21 16.1 %
:HMM:SCOP  64->250 2nr9A1 f.51.1.1 * 1.8e-35 37.6 %
:RPS:PFM   114->231 PF01694 * Rhomboid 5e-08 37.3 %
:HMM:PFM   113->247 PF01694 * Rhomboid 3.2e-31 42.5 134/146  
:HMM:PFM   4->32 PF00643 * zf-B_box 3e-06 27.6 29/42  
:BLT:SWISS 6->44 TOP3B_HUMAN 6e-04 42.1 %
:BLT:SWISS 69->231 YDCA_BACSU 4e-12 29.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54916.1 GT:GENE BAD54916.1 GT:PRODUCT putative membrane protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 56856..57716 GB:FROM 56856 GB:TO 57716 GB:DIRECTION + GB:PRODUCT putative membrane protein GB:PROTEIN_ID BAD54916.1 LENGTH 286 SQ:AASEQ MNDRPPTCVRHRDRATGLACTRCGRPACPECLRPAAVGQHCVDCVREGSAGVRPVRTVAGAPVARSATPLVTYGLIAVNLVFFAITAVQARSIVDNFQSPLFFRLALIPAYVADGEWLRVIGSGFLHWGPLHLALNMFALYIIGIQLEPVLGRWRLLAVYLVALLGGSAGGMLLEPANTIGAGASGAVYGMFGAIAVVIFRLRLNPTQILVVIGINVFLSLSLPGISLWVHLGGLLAGTLATLGVLFLPEWLGVRTSETARTVGWAAIAAVGVASVAAIAVAAAML GT:EXON 1|1-286:0| BL:SWS:NREP 2 BL:SWS:REP 6->44|TOP3B_HUMAN|6e-04|42.1|38/862| BL:SWS:REP 69->231|YDCA_BACSU|4e-12|29.3|157/199| TM:NTM 7 TM:REGION 69->91| TM:REGION 107->129| TM:REGION 142->164| TM:REGION 180->201| TM:REGION 208->230| TM:REGION 232->254| TM:REGION 262->284| SEG 156->174|llavylvallggsaggmll| SEG 232->244|lggllagtlatlg| SEG 263->284|vgwaaiaavgvasvaaiavaaa| RP:PDB:NREP 1 RP:PDB:REP 1->47|2djaA|4e-05|19.1|47/84| RP:PFM:NREP 1 RP:PFM:REP 114->231|PF01694|5e-08|37.3|118/146|Rhomboid| HM:PFM:NREP 2 HM:PFM:REP 113->247|PF01694|3.2e-31|42.5|134/146|Rhomboid| HM:PFM:REP 4->32|PF00643|3e-06|27.6|29/42|zf-B_box| GO:PFM:NREP 2 GO:PFM GO:0004252|"GO:serine-type endopeptidase activity"|PF01694|IPR002610| GO:PFM GO:0016021|"GO:integral to membrane"|PF01694|IPR002610| RP:SCP:NREP 2 RP:SCP:REP 4->47|2djaA1|3e-05|20.5|44/71|g.43.1.1| RP:SCP:REP 68->231|2ic8A1|1e-21|16.1|155/182|f.51.1.1| HM:SCP:REP 64->250|2nr9A1|1.8e-35|37.6|178/0|f.51.1.1|1/1|Rhomboid-like| OP:NHOMO 159 OP:NHOMOORG 151 OP:PATTERN -------------------------------------------------------1---1-------- -11-2-1-111-1-1--11-11--111111111111111111111111111111111111111-1112221-------------------1----------------------------------------------11-----1-3111-----------------12-----------------------1----------------111111---111-1--111--1---11111111111111111-111111111-1-111111---1----------------------------------------------------11---------11-11-----111------11---------------------------------------------------------------------1-11----------1-1-1-----------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------1-------------11121------1-1-11---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------1-------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 47 STR:RPRED 16.4 SQ:SECSTR cccccccccccccccccEEETTTTEEEcHHHHHTcTTTTcccccccc############################################################################################################################################################################################################################################### DISOP:02AL 1-4, 45-60| PSIPRED cccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccEEccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHc //