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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54920.1
DDBJ      :             putative reductase/deaminase
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  335/915 : Eukaryota  69/199 : Viruses  0/175   --->[See Alignment]
c.71.1c.97.1
:373 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   251->367 2b3zD PDBj 4e-11 38.5 %
:RPS:PDB   3->160 3clbB PDBj 2e-08 14.4 %
:RPS:PDB   226->368 2b3jA PDBj 1e-23 29.3 %
:RPS:SCOP  3->220 2aznA1  c.71.1.2 * 4e-15 19.7 %
:RPS:SCOP  228->352 1wwrA1  c.97.1.2 * 4e-21 26.1 %
:HMM:SCOP  2->220 2aznA1 c.71.1.2 * 3.4e-43 37.3 %
:HMM:SCOP  227->369 2hxvA2 c.97.1.2 * 1.7e-31 41.6 %
:RPS:PFM   231->309 PF00383 * dCMP_cyt_deam_1 9e-11 50.0 %
:HMM:PFM   5->212 PF01872 * RibD_C 1.2e-42 35.5 197/200  
:HMM:PFM   227->329 PF00383 * dCMP_cyt_deam_1 6.9e-20 40.4 94/102  
:BLT:SWISS 4->157 RIB7_ARCFU 6e-10 37.0 %
:BLT:SWISS 221->364 RIB2_YEAST 5e-25 44.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54920.1 GT:GENE BAD54920.1 GT:PRODUCT putative reductase/deaminase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 59452..60573 GB:FROM 59452 GB:TO 60573 GB:DIRECTION + GB:PRODUCT putative reductase/deaminase GB:PROTEIN_ID BAD54920.1 LENGTH 373 SQ:AASEQ MSGRPYVLLSAAMSLDGHLDDVGPERLRLSDAADFDRVDRVRAESDAILVGAQTLRRDDPRLLVADQARRAARVAAGKPEHPLKVTVTATGRLDAGLRVWHQGGAKLVYTTAAGAAALGDTLTGLAEVVVLGETIDLGALLDDLGARGVERLMVEGGTRVHTAFLAADLADELQLAVAPLLVGAAGAPRFVDPADFPDRRLTLAEVSRVGDMAVLRYLLRPESAVERDRRFLRRAIELAHASPPSPTAFSVGAVIVADGAEIATGYSRETDPKVHAEEAALNKLDPRDPRLSRATIYSTLEPCSQRATAGRPPCTDRILAAGIPRVVIAWREPSTFVVNCVGVEKLREHGVDVVELPELAEAATAMNRHLDLS GT:EXON 1|1-373:0| BL:SWS:NREP 2 BL:SWS:REP 4->157|RIB7_ARCFU|6e-10|37.0|154/219| BL:SWS:REP 221->364|RIB2_YEAST|5e-25|44.8|143/591| SEG 31->43|daadfdrvdrvra| SEG 61->76|rllvadqarraarvaa| SEG 110->126|ttaagaaalgdtltgla| SEG 136->146|dlgallddlga| SEG 163->188|aflaadladelqlavapllvgaagap| BL:PDB:NREP 1 BL:PDB:REP 251->367|2b3zD|4e-11|38.5|109/360| RP:PDB:NREP 2 RP:PDB:REP 3->160|3clbB|2e-08|14.4|125/508| RP:PDB:REP 226->368|2b3jA|1e-23|29.3|133/151| RP:PFM:NREP 1 RP:PFM:REP 231->309|PF00383|9e-11|50.0|78/100|dCMP_cyt_deam_1| HM:PFM:NREP 2 HM:PFM:REP 5->212|PF01872|1.2e-42|35.5|197/200|RibD_C| HM:PFM:REP 227->329|PF00383|6.9e-20|40.4|94/102|dCMP_cyt_deam_1| GO:PFM:NREP 2 GO:PFM GO:0008270|"GO:zinc ion binding"|PF00383|IPR002125| GO:PFM GO:0016787|"GO:hydrolase activity"|PF00383|IPR002125| RP:SCP:NREP 2 RP:SCP:REP 3->220|2aznA1|4e-15|19.7|208/219|c.71.1.2| RP:SCP:REP 228->352|1wwrA1|4e-21|26.1|115/151|c.97.1.2| HM:SCP:REP 2->220|2aznA1|3.4e-43|37.3|209/0|c.71.1.2|1/1|Dihydrofolate reductase-like| HM:SCP:REP 227->369|2hxvA2|1.7e-31|41.6|137/0|c.97.1.2|1/1|Cytidine deaminase-like| OP:NHOMO 440 OP:NHOMOORG 413 OP:PATTERN --------------------------------------------11111------1-111-------- -11-2-------------------------------3----233----2-----------2111---21-21---1-----1-1-11-1111-111---1111-1-11----------------1211111111-11----------1--1111111---1-1--11--11-1-----1-------------1-------11-1------1----11111111--------------1-----------------1----1---1-11------1----111-----------------------------------------1--11---1111-1--11111----1---11-11111---1-111-1-1111-----------1-----111-------------------------------------1---1-------------------------------11---1----------------1-1------1-----111111211111111111111111-1-111111-11---1111-----1-1-1-------11---1----1--1111111--1--1-111------1------------------------------1----1----11111-11111-1111----11--1------1-1-1111111111111-1111111111111111111111111111111111111111111-11111111-111111111111-1--111111111-1-11---1-11----1----------1---1----1111-111111111--------1----1111121-11----------11-1---1------------------------------------------11-11---1-11- ------------1111111-221111-------111------------11222211122-111111111112111-1-1111111111--1-1111-1---1-1-1-1---------------------------------------------------------------------------------11---1121- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 369 STR:RPRED 98.9 SQ:SECSTR ccccccEEEEEEEcTTccccHHHHHHHHHHHccccccccccTTcccEEEEEHHHHHHHcccccccccHHHHHccGGccccccEEEEEcccccccTTcTTTTcccccEEEEEcTTccHHHHHHHHTTTcccEcccccHHHHHHHHHHTTccEEEEEEcHHHHHHHHHHTcccEEEEEEEccccccTTccccccccccccccEEEEEEEEETTEEEEEEHHHHHHccHHHHHHHHHHHHHHHHHHHTTcccccEEEEEETTEEEEEEEccHHcTTccHHHHHHHHHHHHccccTTEEEEEEEccccccEEcccHHHHHHHHHTTccEEEEEEccTTTcTcTTccccTTccTTcccEEccTTHHHHHHHHHH#### DISOP:02AL 372-374| PSIPRED cccccEEEEEEEEcccccEEcccccccccccHHHHHHHHHHHHHHcEEEEEHHHHEEccccccccccccHHHHHccccccccEEEEEEcccccccccHHHcccccEEEEEEcccHHHHHHHcccEEEEEEccccccHHHHHHHHHHccccEEEEEccHHHHHHHHHcccccEEEEEcccEEEcccccccccccccccHHHHEEccEEEEcccEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEccEEEEEEEccccccccHHHHHHHHHHHHccccccccEEEEEccccccccccccccHHHHHHHccccEEEEEEEcccccccccHHHHHHHHcccEEEEcccHHHHHHHHHHHcccc //