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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD54924.1
DDBJ      :             putative penicillin-binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  811/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
d.175.1e.3.1
:488 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   52->485 3eqvB PDBj 2e-18 30.1 %
:RPS:PDB   76->487 3dwkB PDBj 2e-44 15.5 %
:RPS:SCOP  71->138 1k25B3  d.175.1.1 * 6e-06 18.8 %
:RPS:SCOP  144->485 1mwrA3  e.3.1.1 * 3e-63 21.4 %
:HMM:SCOP  138->483 1qmeA4 e.3.1.1 * 1e-79 36.1 %
:RPS:PFM   159->480 PF00905 * Transpeptidase 4e-31 42.0 %
:HMM:PFM   158->482 PF00905 * Transpeptidase 3.1e-78 37.1 299/304  
:HMM:PFM   16->43 PF04911 * ATP-synt_J 6.3e-05 32.1 28/54  
:BLT:SWISS 1->470 PBPA_MYCS2 e-152 64.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD54924.1 GT:GENE BAD54924.1 GT:PRODUCT putative penicillin-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(64556..66022) GB:FROM 64556 GB:TO 66022 GB:DIRECTION - GB:PRODUCT putative penicillin-binding protein GB:PROTEIN_ID BAD54924.1 LENGTH 488 SQ:AASEQ MNTPLRRVAVAVMVMVVALLANATYVQVFKADDYRNDPRNTRVLLDEYSRQRGQISAGGTVLASSVETEDRYKYLRTYPTDPQAYAPVTGYYTMQNGSGGLERFEDPLLNGSDSQLFGRRLIDLVSGRDPRGGNVLTTLNPVMQQVAYEQLTAKGYTGSVVAIEPSTGKILTMVSTPSYDPNVLAGHDAAETTEALEALNSDPDKPMLNRAISQTYPPGSTFKVVVTAAALANGVATPEDQFTAAPNITLPGTATTLENYNGSSCGPGPTASLTDAFRLSCNTAFVELGQRVGAAALKDTAAAFGVGPHNGIPMPVAESTVGPIPDNAALGQSSIGQRDVALTPLDNAVIAATIANGGVRMEPYLVDQRQGPDLSELSKTKPVSVGQAVSAQVASQLTGMMIASEANTAGGNRAGYTIASKTGTAEHGTDPRNTPPHAWYIAFAPAQNPKIAIAVIVEDGGDRALAATGGSVAAPIARAVLDAGLQGG GT:EXON 1|1-488:0| BL:SWS:NREP 1 BL:SWS:REP 1->470|PBPA_MYCS2|e-152|64.2|467/491| TM:NTM 1 TM:REGION 8->30| SEG 8->21|vavavmvmvvalla| SEG 189->199|aaettealeal| SEG 383->396|vsvgqavsaqvasq| BL:PDB:NREP 1 BL:PDB:REP 52->485|3eqvB|2e-18|30.1|382/425| RP:PDB:NREP 1 RP:PDB:REP 76->487|3dwkB|2e-44|15.5|367/621| RP:PFM:NREP 1 RP:PFM:REP 159->480|PF00905|4e-31|42.0|283/289|Transpeptidase| HM:PFM:NREP 2 HM:PFM:REP 158->482|PF00905|3.1e-78|37.1|299/304|Transpeptidase| HM:PFM:REP 16->43|PF04911|6.3e-05|32.1|28/54|ATP-synt_J| GO:PFM:NREP 2 GO:PFM GO:0008658|"GO:penicillin binding"|PF00905|IPR001460| GO:PFM GO:0009273|"GO:peptidoglycan-based cell wall biogenesis"|PF00905|IPR001460| RP:SCP:NREP 2 RP:SCP:REP 71->138|1k25B3|6e-06|18.8|64/139|d.175.1.1| RP:SCP:REP 144->485|1mwrA3|3e-63|21.4|318/330|e.3.1.1| HM:SCP:REP 138->483|1qmeA4|1e-79|36.1|327/0|e.3.1.1|1/1|beta-lactamase/transpeptidase-like| OP:NHOMO 1833 OP:NHOMOORG 814 OP:PATTERN -------------------------------------------------------------------- 2343833544454533344-44334444444444444667255534432223343223222251234778532222223332611111111111111--11112111121----------1111-1222222222232244---345333223333311233231323464122122222122111113123136666667647666663355346763222321111121562111111111111111--1121-122111-111--22-1--1----1111111-221---1----1-111111111111111111111112348544444444444255256542413444234444432324555212232-33331----121121113323211111111111-11211222112-222223222343212222222222122111111112222122111--------1111111111111111111122122111113333332222233222222123323122111122212222213222231231111111113211212222212221133212423333223333422211111111111---------11111442222211121222222222222222222221-212231----142223222222222222-2232222222222222222444232224444444444434344422222222132222222222222212222222222221222222222222222222222221112222223333233332333---------1122222222322322322222222222211222222331111111111--------------------------1211111112232 ------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------1--------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 436 STR:RPRED 89.3 SQ:SECSTR ###################################################cccEETTccEEEEEEccccEEEE#HHHHHHTTcccGGGcccccTTTTccccccccGGGHHHHHHHcGGGccccHHHHTTcccEEEEcccHHHHHHHHHHHHHTTEEEEEEEEETTTccEEEEEccTTccTTccccTTHcccHHHHTTETccccTTTcccTTTccEEcGGGGHHHHTHHHHHHccccTTcEEEccccccccccccccccTTcccccEEEEEEHHHHHHTTcHHHHHHHHHHHHHHccTTHHHHHHHHTTccccccccHHHcccGGGGccccccHTTcTTcEEcHHHHHHHHHHHTTTcEEEccccEEEEEcccccEEEcccccEEEEcccHHHHHHHHHHHHTTTccTTcTTTTccccEEEEEEEEccTTHTTccTTEEEEEEEEEEcccEEEEEEEEEGTTcEEHHHHHTHHHHHHHHHHHHHcccT DISOP:02AL 1-3| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccEEcccEEEccccccHHHHHHHcccccccHHHHHEEEEEEcccHHHHHHHHHHHHHcccccEEEHHHHHHHHHcccccccEEEEEEcHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEEcccccccccccccccccHHHHHHcccccccccccHHHHccccccHHHHHHHHHHHHHccccccccEEEcccEEEEccEEEEccccccccccccccEEHHHHHHHcccHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHccccEEcHHHHHHHHHHHHcccEEEccEEEEEEEcccccEEcccccccccccccHHHHHHHHHHHEEcccccccccccccEEEEEEccEEccccccccccEEEEEEEEEcccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHccc //